Bioschemas for lifesciences Community Group - Tools
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GitHub repositories
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BioschemasMarkupGenerator
A tool for prototyping markup against the Bioschemas profiles.
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ProfileGenerator
Experimental scripts for creating a new Bioschemas Profile
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RubyExtractor
Extract schema.org RDF, Microdata, or JSON-LD with this Ruby library
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biojs-vis-bioschemas-event-list
A visualization widget for Event data using bioschemas Event Especification
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bioschemas-beacons-mockup Archived
Mock-up to show how bioschemas can be used to expose, collect and integrate metadata about beacon services
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bioschemas-data-harvesting
Details of the harvesting of Bioschemas markup from live deployments on the Web.
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bioschemas-dde
scripts for automated maintenance of bioschemas specifications in the Data Discovery Engine
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bioschemas-goweb
Parses an specification mapping csv to markdown ready for bioschemas.org web.
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bioschemas-nutch-indexer Archived
An Apache Nutch plugin to extract and index bioschemas data from websites
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bioschemas-protein-render
Uses bioschemas-uniprot-adater to get the Bioschemas JSON LD for a UniProt accession and renders it in the simplest way
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bioschemas-proteins-to-crawl Archived
A simple app displaying proteins with Bioschemas markup so a crawler can get the info.
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bioschemas-scraper Archived
Web scraper to harvest Data items using Bioschemas specifications markup.
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bioschemas-uniprot-adapter
Adapter transforming UniProt data from web services into Bioschemas JSON-LD markup
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bioschemas-validation
A repository hosting Bioschemas validation tools
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bioschemas_specification_releases
Repository archiving types and profiles files as released on Bioschemas website
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governance
The governance process and code of conduct for the Bioschemas Community
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map2model Archived
map2model is a Python module for convert specification stored in GDrive files and generates the files needed to publish Bioschemas Types and Profiles to publish them in bioschemas.org page.
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ml-markup-tutorial
A short tutorial on annotating machine-learning resources with Bioschemas
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