HCLSIG/Meetings/2009-11-02 F2F
F2F Meeting, Santa Clara, CA
Santa Clara Marriott, 2700 Mission College Boulevard, Santa Clara, CA 95054, USA
The F2F is being held in conjunction with W3C's TPAC
Monday, November 2, 2009
- 08.00-08.15 PT Welcome
- 08.15-09.15 PT Overview of neuroscience and informatics requirements - Don Doherty, Brainstage
- 09.15-10.00 PT Discussion: Current capabilities and gaps for neuroscience informatics applications
- 10.00-10.30 PT Break
- 10.30-11.15 PT Collaborating with the National Center for Biomedical Ontology .ppt .pptx - Mark Musen, Stanford University
- 11.15-12.00 PT Discussion: Alignment with NCBO (including ISMB SIG)
- 12.00-13.00 PT Lunch
- 13.00-14.00 PT State of the Interest Group: HCLS.ppt - Scott Marshall, Leiden University Medical Center / University of Amsterdam
- 14.00-15.00 PT Discussion: Outreach and Funding Opportunities (Conferences, Papers, Consortia, Grants)
- 15.00-15.30 PT Break
- 15.30-17.00 PT Overview of other W3C groups (RDB2RDF, SPARQL, RIF, OWL2, POWDER) - Eric Prud'hommeaux, W3C and Axel Polleres, DERI
- 17.00-17.30 PT Wrap Up
Tuesday, November 3, 2009
- 08.00-08.15 PT Welcome
- 08.15-09.00 PT Applications of SNOMED and DL in Kaiser's EHR - Peter Hendler, Kaiser Permanente
- 09.00-13.00 PT Task Breakouts
- 13.00-14.00 PT Lunch
- 14.00-15.00 PT A method to propagate permissions in biomedical data using a semantic web framework - Helena Deus, Univ. Texas MDAnderson Cancer Center
- 15.00-16.00 PT Provenance, Semantic Workflows - Yolanda Gil, USC/ISI
- 16.00-16.30 PT Break
- 16.30-17.00 PT Task Alignment / Wrap Up
Minutes
Task Breakouts
BioRDF
For the F2F meeting, it may be helpful for the BioRDF group to work on the neuroscience query federation use case. I hope this use case can also help the SPARQL WG. -Kei
- Participants: Kei Cheung, Matthias Samwald, Michael Miller, Jun Zhao, Scott Marshall, Eric Prud'hommeaux, Don Doherty, Lena Deus, Harold Solbrig, Joshua Phillips, Nigam Shah, Peter Handler, Yolander Gil, ...
- Goals: move forward on the microarray use case
- Alignment with other tasks: LoDD, Sci. Discourse
Agenda
- Introduction - Kei Cheung
- MAGE-TAB Biomarker - Michael Miller
- vOID - Jun Zhao
- aTag - Matthias
- Discussion - All
= Combined LODD/TMO breakout
LODD
- Participants: Julia (maybe), Bosse (maybe), Oktie (yes), Anja (remote), Matthias (remote), Susie (maybe), Elgar (maybe)
- Goals: Focus on building use cases
- Alignment with other tasks: Want to coordinate with the Translational Medicine Ontology
Translational Medicine Ontology
- Participants: Trish (yes), Susie (maybe), Christi (remote), Julia (maybe), Elgar (remote), Bosse (maybe), Colin (remote), Joanne (remote)
- Goals: 1. Finish paper for JBI. 2. Plan next steps for the task.
- Alignment with other tasks: Possible alignment with LODD on application development.
Participants
(Please add your name to this list if you are planning to attend)
- M. Scott Marshall
- Eric Prud'hommeaux
- Susie Stephens (remote)
- Kei-Hoi Cheung
- Oktie Hassanzadeh (Monday)
- Yolanda Gil (Tues)
- Barbara Guttman
- Masao Isshiki (Monday)
- Thierry Michel (Tuesday)
- Roger Cutler
- Bede McCall
- Karen Burns
- Nigam Shah
- Donald Doherty
- Helena Deus (Tues)
- Harold Solbrig
- Michael Braxenthaler
- Matthias Samwald (remote)
- Andrea Splendiani (remote)
- John Madden (remote)
- Tim Clark (remote)
- Anja Jentzsch (remote)
- Mark Musen (Monday)
- Trish Whetzler (remote)
- Peter Hendler (Tues)
- Elgar Pichler (remote)
- Michael Miller
- Joanne Luciano (remote / part-time)
- Yong Gao (remote)
- Jun Zhao (remote)
Dial-In Information
Monday, 2 November 16:00-02:00 UTC (11:00am-9:00pm Boston local)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 42571 ("HCLS1")
- IRC Channel: W3C members: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC), Click mibbithcls for instant web access to IRC and enter your name in the "Nick" input box.
- LiveMeeting Attendee URL: https://www.livemeeting.com/cc/jnjamericas/join?id=GH4DR6&role=attend&pw=jm-wR9S
Tuesday, 3 November 16:00-02:00 UTC (11:00am-9:00pm Boston local)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 42571 ("HCLS1")
- IRC Channel: W3C members: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC), Click mibbithcls for instant web access to IRC and enter your name in the "Nick" input box.
- LiveMeeting Attendee URL: https://www.livemeeting.com/cc/jnjamericas/join?id=MPZK3R&role=attend&pw=r5*4%402P
BioRDF Breakout, Tuesday, 3 November 17:00-20:00 UTC (12:00pm-3:00pm Boston local, 6:00PM - 9:00PM CET)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 42571 ("HCLS1")
- IRC Channel: W3C members: irc.w3.org port 6665 channel #HCLS1 (see W3C IRC page for details, or see Web IRC), Click mibbithcls for instant web access to IRC and enter your name in the "Nick" input box.
- WebEx (NCBO hosted) URL: https://stanford.webex.com/stanford/j.php?ED=123758442&UID=1139021767&PW=NMDAwNDQyZTVl&RT=MiM0 , Enter your name and email address., Enter the meeting password: ncbomeeting, Click "Join Now".
TMO/LODD Breakout, Tuesday, 3 November 17:00-20:00 UTC (12:00pm-3:00pm Boston local, 6:00PM - 9:00PM CET)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 42572 ("HCLS2")
- IRC Channel: W3C members: irc.w3.org port 6665 channel #HCLS2 (see W3C IRC page for details, or see Web IRC), Click mibbithcls2 for instant web access to IRC and enter your name in the "Nick" input box.
- LiveMeeting Attendee URL: https://www.livemeeting.com/cc/jnjamericas/join?id=MPZK3R&role=attend&pw=r5*4%402P
Minutes
Thanks to the scribes, especially Eric!