HCLS/OntologyTaskForce/SeedOntology
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< HCLS | OntologyTaskForce
Seed Ontology for Bench to Bedside Ontology (Cellular and Molecular Biologist View)
OWL Version of Parkinson's Disease Ontology
Currently LOCK with Vipul Kashyap
Please request the lock from the current holder BEFORE making changes to this ontology.
This is the latest version of the ontology dated 27th September 2006
BillBug (2006-09-05): added a page that includes:
- research article references for each specific entity specified here
- a OBO Phenotype Syntax-styled formal description of some of the statements made in these articles that make reference to these entities making use of the Ontology of Phenotypic Qualities.
The current version of the ontology looks like:
Class AllelicVariant
subClassOf: owl:Thing Class AlphaSynuclein subClassOf: Gene Class AnatomicalEntity subClassOf: owl:Thing Class BioMarker subClassOf: owl:Thing Class Brain subClassOf: Organ Class Cell subClassOf: MaterialAnatomicalEntity Class CellularComponent subClassOf: MaterialAnatomicalEntity Class CellularPathway subClassOf: Pathway Class CellularStudy subClassOf: Study Class CerebellarCortex subClassOf: GrossAnatomicalCerebellumPart Class CerebellarCortexLobePart subClassOf: RegionalCerebellarCortexPart Class CerebellarCortexLobularPart subClassOf: RegionalCerebellarCortexPart Class CerebellarHemisphere subClassOf: RegionalCerebellarCortexPart Class CerebellarPurkinjeNeuron subClassOf: PurkinjeNeuron Class CerebellarWhiteMatter subClassOf: GrossAnatomicalCerebellumPart Class Cerebellum subClassOf: RegionalBrainPart Class CerebralPeduncle subClassOf: RegionalMidBrainPart Class CTerminalHydrolase-1 subClassOf: MacroMolecule Class CytoarchitecturalCerbellumPart subClassOf: RegionalCerebellumPart Class CytoarchitecturalCerebellarCortexPart subClassOf: CytoarchitecturalCerbellumPart Class CytosolicProteasomeComplex subClassOf: CellularComponent Class Dardarin subClassOf: Protein Class DeepCerebellarNuclei subClassOf: GrossAnatomicalCerebellumPart Class Dementia subClassOf: Disease Class Disease subClassOf: owl:Thing Class DJ-1 subClassOf: Protein Class DopaminergicNeuron subClassOf: Neuron Class E3Ligase subClassOf: Protein Class Gene subClassOf: owl:Thing Class Glucocerebrosidase subClassOf: MacroMolecule Class GrossAnatomicalCerebellumPart subClassOf: RegionalCerebellumPart Class LewyBody subClassOf: NonCellularStructure Class LRRK2 subClassOf: Gene Class LRRK2Variant subClassOf: AllelicVariant Class MacroMolecule subClassOf: MaterialAnatomicalEntity Class MaterialAnatomicalEntity subClassOf: AnatomicalEntity Class MidBrain subClassOf: RegionalBrainPart Class NeuromelaninPigmentedCell subClassOf: Neuron Class Neuron subClassOf: Cell Class Neuropil subClassOf: SupraCellularStructure Class NonCellularStructure subClassOf: MaterialAnatomicalEntity Class Organ subClassOf: MaterialAnatomicalEntity Class Parkin subClassOf: Protein Class ParkinGene subClassOf: Gene Class ParkinsonsDisease subClassOf: Disease Class ParsCompacta subClassOf: RegionalSubstantiaNigraPart Class ParsReticulata subClassOf: RegionalSubstantiaNigraPart Class Pathway subClassOf: owl:Thing Class Patient subClassOf: owl:Thing Class PINK-1 subClassOf: Protein Class Protein subClassOf: owl:Thing Class ProteosomalPathway subClassOf: Pathway Class PurkinjeNeuron subClassOf: Neuron Class RegionalBrainPart subClassOf: RegionalOrganPart Class RegionalCerebellarCortexPart subClassOf: DeepCerebellarNuclei Class RegionalCerebellumPart subClassOf: RegionalBrainPart Class RegionalCerebralPedunclePart subClassOf: RegionalMidBrainPart Class RegionalMidBrainPart subClassOf: RegionalBrainPart Class RegionalOrganPart subClassOf: MaterialAnatomicalEntity Class RegionalSubstantiaNigraPart subClassOf: RegionalCerebralPedunclePart Class Sample subClassOf: owl:Thing Class Study subClassOf: owl:Thing Class SubstantiaNigra subClassOf: RegionalCerebralPedunclePart Class SupraCellularStructure subClassOf: MaterialAnatomicalEntity Class Synuclein subClassOf: Protein Class Tau subClassOf: Gene Class THPlusNeuron subClassOf: Neuron Class Tyrosine3Monooxygenase subClassOf: MacroMolecule Class TyrosineHydroxylase subClassOf: MacroMolecule Class UbiquitinProteinLigase subClassOf: MacroMolecule Class UCHL-1 subClassOf: Gene Property associated_with domain: Pathway domain: Protein range: Cell range: BioMarker Property causes_disease domain: LRRK2Variant domain: AllelicVariant range: ParkinsonsDisease range: Disease inverseOf: disease_caused_by Property component_of domain: Protein range: AnatomicalEntity inverseOf: has_component Property contains domain: DopaminergicNeuron domain: Sample range: TyrosineHydroxylase range: Protein Property disease_caused_by domain: Disease domain: ParkinsonsDisease range: AllelicVariant range: LRRK2Variant inverseOf: causes_disease Property has_component domain: AnatomicalEntity range: Protein inverseOf: component_of Property has_disease domain: Patient range: Disease Property has_function domain: ProteosomalPathway range: xsd:string Property has_mutation domain: Gene range: AllelicVariant inverseOf: is_mutation_of Property has_pathological_hallmark domain: ParkinsonsDisease range: LewyBody inverseOf: is_pathological_hallmark_of Property has_risk_factor domain: ParkinsonsDisease range: UCHL-1 inverseOf: is_risk_factor_of Property has_sample domain: Patient range: Sample Property has_variant domain: Gene range: AllelicVariant inverseOf: is_variant_of Property interacts_with domain: Protein range: Protein inverseOf: interacts_with Property involved_in domain: Protein range: Pathway inverseOf: involves Property involves domain: Pathway range: Protein inverseOf: involved_in Property is_located_in domain: Neuron range: Brain Property is_mutation_of domain: AllelicVariant range: Gene inverseOf: has_mutation Property is_pathological_hallmark_of domain: LewyBody range: ParkinsonsDisease inverseOf: has_pathological_hallmark Property is_risk_factor_of domain: UCHL-1 range: ParkinsonsDisease inverseOf: has_risk_factor Property is_variant_of domain: AllelicVariant range: Gene inverseOf: has_variant Property level_of_expression domain: Protein range: xsd:string Property replication domain: AllelicVariant range: xsd:int Property transcribes_from domain: Dardarin domain: Protein range: Gene range: UCHL-1 inverseOf: transcribes_to Property transcribes_to domain: UCHL-1 domain: Gene range: Dardarin range: Protein inverseOf: transcribes_from
