<matthias_samwald> i am not hearing anyone. howver, HCLS is the correct passcode, right?

<mscottm2> having trouble getting past Zakim again..

<mscottm2> Erich Gombocz from IO Informatics

http://www.w3.org/wiki/HCLSIG/Pharmacogenomics

michel: use cases

http://www.w3.org/wiki/HCLSIG/Pharmacogenomics

<egombocz> We have been working on extending the use case at: http://www.w3.org/2001/sw/sweo/public/UseCases/IOInformatics/ within our working group for best practices in data sharing

matthias: competency questions listed in google doc

https://docs.google.com/document/d/1I9xyVKhO9wG7My2fWu9S-wMwWZxG6PkRc98kOxUqH-o/edit

conceptual model: https://docs.google.com/drawings/d/1OaqlmiTbIAkgHM6kCV-4xbRddHJiN1YZkCWdNHvwiGI/edit?authkey=CIT4rcwM&authkey=CIT4rcwM

<egombocz> egombocz24@gmail.com

axioms: https://docs.google.com/document/d/1BeaU3VJW1S_R3eB5ncrcW9wJ-lMU4xdmxCdjH8E0i5s/edit

matthias: variants easier represented as individuals rather than classes

<matthias_samwald> http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl

matthias: easier to use rdf syntax for data

<matthias_samwald> i committed the new version of the file: http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl

https://www.pharmgkb.org/drug/PA448004?tabType=tabDrugLabels#tabview=tab0&subtab=31

fda labels - https://www.pharmgkb.org/search/labelList.action

matthias: rdf data essential

<matthias_samwald> http://www.w3.org/wiki/HCLSIG/pharmacogenomics_2012

<mscottm2> http://s5.semanticscience.org/phpmyadmin/db_structure.php?server=1&token=fb6c92412137ef32f936580d32a3ea78&db=dbsnp&table=&lang=en-utf-8&collation_connection=utf8_general_ci

<matthias_samwald> http://pharmaadme.org/joomla/index.php?option=com_content&task=view&id=14&Itemid=29

<matthias_samwald> <- the list of SNPs that i used as a starting point

<mscottm2> Next Meeting: March 1

<scribe> ACTION: items to develop use cases - breast cancer (scott), competency questions (matthias and michel), organ transplant (erich) [recorded in http://www.w3.org/2012/02/16-HCLS-minutes.html#action01]

<scribe> ACTION: item to michel to regenerate pharmgkb data, put up endpoint, hopefully get and process the clinical annotations (licensed) [recorded in http://www.w3.org/2012/02/16-HCLS-minutes.html#action02]

This is scribe.perl Revision: 1.136  of Date: 2011/05/12 12:01:43  
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Got date from IRC log name: 16 Feb 2012
Guessing minutes URL: http://www.w3.org/2012/02/16-HCLS-minutes.html

WARNING: No person found for ACTION item: items to develop use cases  - breast cancer (scott), competency questions (matthias and michel), organ transplant (erich) [recorded in http://www.w3.org/2012/02/16-hcls-minutes.html#action01]

People with action items: item

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