16:04:26 <RRSAgent> RRSAgent has joined #HCLS
16:04:26 <RRSAgent> logging to http://www.w3.org/2012/02/16-HCLS-irc
16:04:34 <michel> chair: Michel
16:05:01 <matthias_samwald> i am not hearing anyone. howver, HCLS is the correct passcode, right?
16:05:01 <mscottm2> having trouble getting past Zakim again..
16:06:09 <Zakim> +[IPcaller.a]
16:08:37 <Zakim> +Scott_Marshall
16:09:04 <mscottm2> Erich Gombocz from IO Informatics
16:10:16 <michel> http://www.w3.org/wiki/HCLSIG/Pharmacogenomics
16:14:58 <Zakim> +ScottB
16:14:58 <michel> michel: use cases
16:15:45 <michel> http://www.w3.org/wiki/HCLSIG/Pharmacogenomics
16:17:21 <egombocz> We have been working on extending the use case at: http://www.w3.org/2001/sw/sweo/public/UseCases/IOInformatics/ within our working group for best practices in data sharing
16:17:51 <michel> matthias: competency questions listed in google doc
16:18:03 <michel> https://docs.google.com/document/d/1I9xyVKhO9wG7My2fWu9S-wMwWZxG6PkRc98kOxUqH-o/edit
16:22:37 <michel> conceptual model: https://docs.google.com/drawings/d/1OaqlmiTbIAkgHM6kCV-4xbRddHJiN1YZkCWdNHvwiGI/edit?authkey=CIT4rcwM&authkey=CIT4rcwM
16:24:46 <BobF> BobF has joined #hcls
16:27:59 <egombocz> egombocz24@gmail.com
16:33:23 <michel> axioms: https://docs.google.com/document/d/1BeaU3VJW1S_R3eB5ncrcW9wJ-lMU4xdmxCdjH8E0i5s/edit
16:36:21 <michel> matthias: variants easier represented as individuals rather than classes
16:36:45 <matthias_samwald> http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl
16:38:23 <michel> matthias: easier to use rdf syntax for data
16:44:25 <matthias_samwald> i committed the new version of the file: http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl
16:44:34 <michel> https://www.pharmgkb.org/drug/PA448004?tabType=tabDrugLabels#tabview=tab0&subtab=31
16:45:38 <michel> fda labels - https://www.pharmgkb.org/search/labelList.action
16:56:03 <michel> matthias: rdf data essential
16:56:21 <matthias_samwald> http://www.w3.org/wiki/HCLSIG/pharmacogenomics_2012
17:00:12 <mscottm2> http://s5.semanticscience.org/phpmyadmin/db_structure.php?server=1&token=fb6c92412137ef32f936580d32a3ea78&db=dbsnp&table=&lang=en-utf-8&collation_connection=utf8_general_ci
17:03:52 <matthias_samwald> http://pharmaadme.org/joomla/index.php?option=com_content&task=view&id=14&Itemid=29
17:04:29 <matthias_samwald> <- the list of SNPs that i used as a starting point
17:06:39 <mscottm2> Next Meeting: March 1 
17:07:17 <michel> action items: develop use cases  - breast cancer (scott), competency questions (matthias and michel), organ transplant (erich)
17:09:42 <michel> action item: michel to regenerate pharmgkb data, put up endpoint, hopefully get and process the clinical annotations (licensed)
17:10:24 <Zakim> -[IPcaller]
17:10:28 <Zakim> -ScottB
17:10:30 <Zakim> - +1.510.705.aaaa
17:17:17 <Zakim> -Scott_Marshall
17:17:19 <Zakim> SW_HCLS()11:00AM has ended
17:17:19 <Zakim> Attendees were +1.510.705.aaaa, [IPcaller], Scott_Marshall, ScottB
17:33:14 <michel> rrsagent, draft minutes
17:33:14 <RRSAgent> I have made the request to generate http://www.w3.org/2012/02/16-HCLS-minutes.html michel
17:33:26 <michel> rrsagent, make log world-visible
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