See also: IRC log
<matthias_samwald> i am not hearing anyone. howver, HCLS is the correct passcode, right?
<mscottm2> having trouble getting past Zakim again..
<mscottm2> Erich Gombocz from IO Informatics
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics
michel: use cases
http://www.w3.org/wiki/HCLSIG/Pharmacogenomics
<egombocz> We have been working on extending the use case at: http://www.w3.org/2001/sw/sweo/public/UseCases/IOInformatics/ within our working group for best practices in data sharing
matthias: competency questions listed in google doc
https://docs.google.com/document/d/1I9xyVKhO9wG7My2fWu9S-wMwWZxG6PkRc98kOxUqH-o/edit
conceptual model: https://docs.google.com/drawings/d/1OaqlmiTbIAkgHM6kCV-4xbRddHJiN1YZkCWdNHvwiGI/edit?authkey=CIT4rcwM&authkey=CIT4rcwM
<egombocz> egombocz24@gmail.com
axioms: https://docs.google.com/document/d/1BeaU3VJW1S_R3eB5ncrcW9wJ-lMU4xdmxCdjH8E0i5s/edit
matthias: variants easier represented as individuals rather than classes
<matthias_samwald> http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl
matthias: easier to use rdf syntax for data
<matthias_samwald> i committed the new version of the file: http://translationalmedicineontology.googlecode.com/svn/trunk/usage_examples/tmo_warfarin_example_via_SPIN.ttl
https://www.pharmgkb.org/drug/PA448004?tabType=tabDrugLabels#tabview=tab0&subtab=31
fda labels - https://www.pharmgkb.org/search/labelList.action
matthias: rdf data essential
<matthias_samwald> http://www.w3.org/wiki/HCLSIG/pharmacogenomics_2012
<matthias_samwald> http://pharmaadme.org/joomla/index.php?option=com_content&task=view&id=14&Itemid=29
<matthias_samwald> <- the list of SNPs that i used as a starting point
<mscottm2> Next Meeting: March 1
<scribe> ACTION: items to develop use cases - breast cancer (scott), competency questions (matthias and michel), organ transplant (erich) [recorded in http://www.w3.org/2012/02/16-HCLS-minutes.html#action01]
<scribe> ACTION: item to michel to regenerate pharmgkb data, put up endpoint, hopefully get and process the clinical annotations (licensed) [recorded in http://www.w3.org/2012/02/16-HCLS-minutes.html#action02]
This is scribe.perl Revision: 1.136 of Date: 2011/05/12 12:01:43 Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/ Guessing input format: RRSAgent_Text_Format (score 1.00) No ScribeNick specified. Guessing ScribeNick: michel Inferring Scribes: michel WARNING: No "Topic:" lines found. Default Present: +1.510.705.aaaa, [IPcaller], Scott_Marshall, ScottB Present: +1.510.705.aaaa [IPcaller] Scott_Marshall ScottB WARNING: No meeting title found! You should specify the meeting title like this: <dbooth> Meeting: Weekly Baking Club Meeting Got date from IRC log name: 16 Feb 2012 Guessing minutes URL: http://www.w3.org/2012/02/16-HCLS-minutes.html WARNING: No person found for ACTION item: items to develop use cases - breast cancer (scott), competency questions (matthias and michel), organ transplant (erich) [recorded in http://www.w3.org/2012/02/16-hcls-minutes.html#action01] People with action items: item WARNING: Input appears to use implicit continuation lines. You may need the "-implicitContinuations" option. WARNING: No "Topic: ..." lines found! Resulting HTML may have an empty (invalid) <ol>...</ol>. Explanation: "Topic: ..." lines are used to indicate the start of new discussion topics or agenda items, such as: <dbooth> Topic: Review of Amy's report[End of scribe.perl diagnostic output]