HCLSIG/PharmaOntology/Meetings/2010-04-29 Conference Call
Conference Details
* Date of Call: Thursday April 29 2010 * Time of Call: 12:00pm - 1:00pm ET * Dial-In #: +1.617.761.6200 (Cambridge, MA) * Dial-In #: +33.4.89.06.34.99 (Nice, France) * Dial-In #: +44.117.370.6152 (Bristol, UK) * Participant Access Code: 42572 ("HCLS2") * IRC Channel: irc.w3.org port 6665 channel #HCLS2 (see W3C IRC page for details, or see Web IRC) * Mibbit quick start: Click on mibbit for instant IRC access * Duration: 1h * Convener: Susie
Agenda
- TMO Ontology - Elgar, Michel, Trish
- Demo Data - Michel
- IO Informatics Data - Elgar
- Artificial Claims Data - Janos
- Interface/eMerge - Bosse, Chris
- Inclusion/Exclusion Criterion - Michel
- TMO Next Steps - Susie
- Outreach (IHI, Bio-IT World Europe, UPenn Translational Medicine) - Michel, Susie
- AOB
Minutes
Attendees: Janos, Trish, Bob, Elgar, Scott, Chris, Paul, Michel, Susie
Apologies: Bosse
<epichler> introductions
<epichler> ... Bob Powers: interested in ontologies
<epichler> ... Paul Konstant: colleague of Susie's, reviewing TMO
<epichler> TMO update:
<epichler> Trish, Susie: aiming at uploading it into Bioportal at end of month
<epichler> Elgar: looking at RxNorm schema and drug ontology questions
<epichler> Paul: IAO related question on TMO
<epichler> Michel: these terms directly imported from IAO ...
<epichler> Paul, Michel: discussion on measures, units, ...
<epichler> Michel: interested parties should join IAO group meeting discussions on Tuesdays
<epichler> Paul: re measurements looking also at OBI ... questions, eg. on 'protein', 'protein target role', ...
<epichler> Michel: describing current TMO handling of roles that entities play in processes ...
<epichler> Bob, Michel: further discussion of IAO issues; example: allele
<epichler> Paul, Michel: 'diagnosis' vs 'diagnosis result'
<epichler> Bob: thought about OGMS (ontology of general medical sciences)?
<epichler> Michel: just looking at it ... not much overlap ...
<epichler> Susie: should we put TMO on Bioportal? ready for first version release there?
<epichler> Joanne: submit also to OBO foundry?
<epichler> Michel: rather not
<epichler> Michel: application ontologies don't seem to be part of OBO Foundry
<epichler> Joanne: will check on that
<Joanne> The following text from an email message about the influenza ontology indicates that it is OBO foundry....:
<Joanne> Version A, is the version Joanne and Lynn speak about that will be done >> soon. When they say it will be done soon, they are speaking of a draft that >> they intend to submit to the OBO Foundry for review. >> >> Â Version B, the version that Richard refers to when he says it will not be >> done soon, is a version that has been through OBO Foundry review process and >> has been approved for inclusion in the OBO Foundry.
<Joanne> The above mentioned ontology is an "application ontology" much like the TMO
<epichler> Susie: suggest putting it in Bioportal first; then consider distributing elsewhere; agreement?
<epichler> Bob: where would source code be maintained?
<epichler> Trish: still on Google code; Bioportal is set up to pull ontologies from different sources
<epichler> Susie: then go ahead and put it on Bioportal
<epichler> Trish: OK
<epichler> data update
<epichler> Michel: no news
<epichler> Elgar: nothing on the IOInformatics data front
<epichler> Janos: doing data analytics on medical data at SUNY ...
<epichler> Janos: is generating fake medical claim data ... want to build interface for various data consumers in health care ...
<epichler> Janos: data are not anonymized but completely artificially generated to avoid regulatory restrictions ...
<epichler> Susie: when and how could we get access to data?
<epichler> Janos: will report on availability status next week ...
<epichler> Emerge & Marshfield Clinic
<epichler> Chris: Luke is back ... trying to restart meetings ...
<epichler> TMO next steps
<epichler> Michel: need to work on patient record representation and linking to it ...
<epichler> Michel: when rdf-izing ideally would have links/mappings defined, e.g. from drug instances to DailyMed ...
<epichler> Susie: thinking about how to get this done ... have talked to Eric ... how to coordinate Eric's involvement in this?
<epichler> Susie: referring to John Halamka BioIT talk on funding opportunities ... should consider which vocabularies (SNOMED, LOINC, HL7, ...) are being used by government ...
<epichler> Chris: want to focus on stepwise progression for an institution to make data available to various data consumers ...
<epichler> Susie, Chris: important to keep in mind what reality looks like for others
<epichler> outreach
<epichler> Susie: IHI paper ... who is interested in being the lead on this?
<epichler> Susie: approached by CHI: who wants to present on TMO at BioIT Europe (2010/10/05-07)? ... need to go back to CHI ... reimbursement of costs for speaker could be available ... interested parties should contact Susie
<epichler> Susie: Wiki pages have been updated ... recent presentations should be uploaded