HCLSIG/PharmaOntology/Data/MappingDataToTMO
Summary: The mapping of TMO-relevant data to the TMO
@prefix rdfs:<http://www.w3.org/2000/01/rdf-schema#>.
@prefix owl: <http://www.w3.org/2002/07/owl#>.
@prefix obo: <http://www.geneontology.org/formats/oboInOwl#>.
@prefix foaf: <http://xmlns.com/foaf/0.1/>.
@prefix linkedct: <http://data.linkedct.org/resource/linkedct/>.
@prefix drugbank: <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/> .
@prefix dailymed: <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/>.
@prefix diseasome: <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/>.
@prefix medicare: <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/>.
@prefix sider: <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/>.
@prefix tmo: <http://www.w3.org/2001/sw/hcls/ns/transmed/tmo#> .
@prefix translator: <tag:eric@w3.org:2009/tmo/translator#> .
@prefix so: <http://purl.org/obo/owl/SO#>.
@prefix obo: <http://purl.obolibrary.org/obo/> .
### LINKED CT
# institution to agency
tmo:TMO_0025 owl:equivalentClass linkedct:agency .
# disease to condition
tmo:TMO_0047 owl:equivalentClass linkedct:condition .
# intervention to intervention
tmo:TMO_0030 owl:equivalentClass linkedct:intervention .
# health outcome (unclassified - probably should be an ICE) to primary and secondary outcomes
tmo:TMO_0055 owl:equivalentClass linkedct:primary_outcomes.
tmo:TMO_0055 owl:equivalentClass linkedct:secondary_outcomes.
# trial arm group to trial arm group
tmo:TMO_0046 owl:equivalentClass linkedct:trial_arm_group.
# clinical trial to trial
tmo:TMO_0032 owl:equivalentClass linkedct:trials .
### DAILYMED
# formulated pharmaceutical to drug
tmo:TMO_0001 owl:equivalentClass dailymed:drugs .
# pharmaceutical ingredient to ingredients;
tmo:TMO_0071 owl:equivalentClass dailymed:ingredients .
# Ranges mapping for dailymed:activeIngredient and dailymed:inactiveIngredient
dailymed:activeIngredient rdfs:range tmo:TMO_0000 .
dailymed:inactiveIngredient rdfs:range tmo:TMO_0003 .
# institution to organization
tmo:TMO_0025 owl:equivalentClass dailymed:organization .
# disease to disease
tmo:TMO_0047 owl:equivalentClass diseasome:diseases .
### DRUGBANK
# missing a generic drug interaction class; TMO has drug-drug interaction
# tmo:TMO_0040 owl:equivalentClass drugbank:drug_interactions
# pharmaceutical formulation to drug (formulation + molecular properties are described)
tmo:TMO_0067 owl:equivalentClass drugbank:targets .
tmo:TMO_0001 owl:equivalentClass drugbank:drugs .
obo:IAO_0000088 owl:equivalentClass drugbank:references .
# owl:equivalentClass drugbank:enzymes
### DISEASOME
so:SO_0000704 owl:equivalentClass diseasome:genes .
tmo:TMO_0047 owl:equivalentClass diseasome:diseases .
### MEDICARE
tmo:TMO_0001 owl:equivalentClass medicare:drugs .
### SIDER
tmo:TMO_0001 owl:equivalentClass sider:drugs .
tmo:TMO_0061 owl:equivalentClass sider:side_effects .
### PHARMGKB
obo:OBI_0000682 owl:equivalentClass pharmgkb:Association .
obo:OBI_0000682 owl:equivalentClass pharmgkb:DrugGeneVariantInteraction .
so:SO_0000704 owl:equivalentClass pharmgkb:Gene .
tmo:TMO_0047 owl:equivalentClass pharmgkb:Disease .
tmo:TMO_0001 owl:equivalentClass pharmgkb:Drug .
###PCHR
<tag:eric@w3.org:2009/pim/basicAddress> a obo:IAO_0000030 .
foaf:Person rdfs:subClassOf http://www.ifomis.org/bfo/1.1/snap#MaterialEntity .
# demographics as a
translator:Demographics rdfs:subClassOf tmo:TMO_0017.
tmo:TMO_0001 owl:equivalentClass translator:Drug .
tmo:TMO_0047 owl:equivalentClass translator:Condition
translator:Procedure
# allergy as a kind of environmental measure
translator:Allergy rdfs:subClassOf tmo:TMO_0018 .
# a planned process involving the introduction of foreign material into a subject
translator:Immunization owl:equivalentClass obo:OBI_1110015 .
# behavoir (sic) as
translator:Behavoir
#relation as a medical family history
translator:Relation
# encounter as a diagnosis process
translator:Encounter owl:equivalentClass tmo:TMO_0031.
# practice to institution
translator:Practice rdfs:subClassOf tmo:TMO_0025.
# the following are phenotypic measures
translator:CompleteBloodCount rdfs:subClassOf tmo:TMO_0019.
translator:LipidPanel rdfs:subClassOf tmo:TMO_0019.
translator:HepaticFunctionPanel rdfs:subClassOf tmo:TMO_0019.
translator:RenalFunctionPanel rdfs:subClassOf tmo:TMO_0019.
translator:ThyroidFunction rdfs:subClassOf tmo:TMO_0019.
translator:ComprehensiveMetabolicPanel rdfs:subClassOf tmo:TMO_0019.
translator:physicalObservation rdfs:range tmo:TMO_0022 .
LODD integration
<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>.