HCLSIG/PharmaOntology/Data/MappingDataToTMO
Summary: The mapping of TMO-relevant data to the TMO
@prefix rdfs:<http://www.w3.org/2000/01/rdf-schema#>. @prefix owl: <http://www.w3.org/2002/07/owl#>. @prefix obo: <http://www.geneontology.org/formats/oboInOwl#>. @prefix foaf: <http://xmlns.com/foaf/0.1/>. @prefix linkedct: <http://data.linkedct.org/resource/linkedct/>. @prefix drugbank: <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/> . @prefix dailymed: <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/>. @prefix diseasome: <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/>. @prefix medicare: <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/>. @prefix sider: <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/>. @prefix tmo: <http://www.w3.org/2001/sw/hcls/ns/transmed/tmo#> . @prefix translator: <tag:eric@w3.org:2009/tmo/translator#> . @prefix so: <http://purl.org/obo/owl/SO#>. @prefix obo: <http://purl.obolibrary.org/obo/> . ### LINKED CT # institution to agency tmo:TMO_0025 owl:equivalentClass linkedct:agency . # disease to condition tmo:TMO_0047 owl:equivalentClass linkedct:condition . # intervention to intervention tmo:TMO_0030 owl:equivalentClass linkedct:intervention . # health outcome (unclassified - probably should be an ICE) to primary and secondary outcomes tmo:TMO_0055 owl:equivalentClass linkedct:primary_outcomes. tmo:TMO_0055 owl:equivalentClass linkedct:secondary_outcomes. # trial arm group to trial arm group tmo:TMO_0046 owl:equivalentClass linkedct:trial_arm_group. # clinical trial to trial tmo:TMO_0032 owl:equivalentClass linkedct:trials . ### DAILYMED # formulated pharmaceutical to drug tmo:TMO_0001 owl:equivalentClass dailymed:drugs . # pharmaceutical ingredient to ingredients; tmo:TMO_0071 owl:equivalentClass dailymed:ingredients . # Ranges mapping for dailymed:activeIngredient and dailymed:inactiveIngredient dailymed:activeIngredient rdfs:range tmo:TMO_0000 . dailymed:inactiveIngredient rdfs:range tmo:TMO_0003 . # institution to organization tmo:TMO_0025 owl:equivalentClass dailymed:organization . # disease to disease tmo:TMO_0047 owl:equivalentClass diseasome:diseases . ### DRUGBANK # missing a generic drug interaction class; TMO has drug-drug interaction # tmo:TMO_0040 owl:equivalentClass drugbank:drug_interactions # pharmaceutical formulation to drug (formulation + molecular properties are described) tmo:TMO_0067 owl:equivalentClass drugbank:targets . tmo:TMO_0001 owl:equivalentClass drugbank:drugs . obo:IAO_0000088 owl:equivalentClass drugbank:references . # owl:equivalentClass drugbank:enzymes ### DISEASOME so:SO_0000704 owl:equivalentClass diseasome:genes . tmo:TMO_0047 owl:equivalentClass diseasome:diseases . ### MEDICARE tmo:TMO_0001 owl:equivalentClass medicare:drugs . ### SIDER tmo:TMO_0001 owl:equivalentClass sider:drugs . tmo:TMO_0061 owl:equivalentClass sider:side_effects . ### PHARMGKB obo:OBI_0000682 owl:equivalentClass pharmgkb:Association . obo:OBI_0000682 owl:equivalentClass pharmgkb:DrugGeneVariantInteraction . so:SO_0000704 owl:equivalentClass pharmgkb:Gene . tmo:TMO_0047 owl:equivalentClass pharmgkb:Disease . tmo:TMO_0001 owl:equivalentClass pharmgkb:Drug . ###PCHR <tag:eric@w3.org:2009/pim/basicAddress> a obo:IAO_0000030 . foaf:Person rdfs:subClassOf http://www.ifomis.org/bfo/1.1/snap#MaterialEntity . # demographics as a translator:Demographics rdfs:subClassOf tmo:TMO_0017. tmo:TMO_0001 owl:equivalentClass translator:Drug . tmo:TMO_0047 owl:equivalentClass translator:Condition translator:Procedure # allergy as a kind of environmental measure translator:Allergy rdfs:subClassOf tmo:TMO_0018 . # a planned process involving the introduction of foreign material into a subject translator:Immunization owl:equivalentClass obo:OBI_1110015 . # behavoir (sic) as translator:Behavoir #relation as a medical family history translator:Relation # encounter as a diagnosis process translator:Encounter owl:equivalentClass tmo:TMO_0031. # practice to institution translator:Practice rdfs:subClassOf tmo:TMO_0025. # the following are phenotypic measures translator:CompleteBloodCount rdfs:subClassOf tmo:TMO_0019. translator:LipidPanel rdfs:subClassOf tmo:TMO_0019. translator:HepaticFunctionPanel rdfs:subClassOf tmo:TMO_0019. translator:RenalFunctionPanel rdfs:subClassOf tmo:TMO_0019. translator:ThyroidFunction rdfs:subClassOf tmo:TMO_0019. translator:ComprehensiveMetabolicPanel rdfs:subClassOf tmo:TMO_0019. translator:physicalObservation rdfs:range tmo:TMO_0022 .
LODD integration
<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/dailymed/resource/dailymed/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://dbpedia.org/ontology/Drug>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/drugs>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Medicine> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/medicare/resource/medicare/drugs>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://data.linkedct.org/resource/linkedct/condition> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases>. <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://data.linkedct.org/resource/linkedct/condition>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://www4.wiwiss.fu-berlin.de/sider/resource/sider/side_effects>. <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseases> owl:equivalentClass <http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw/Disease>.