HCLSIG/LODD/Meetings/2010-04-14 Conference Call
Conference Details
- Date of Call: Wednesday April 14, 2010
- Time of Call: 11:00am Eastern Daylight Time (EDT), 16:00 British Summer Time (BST), 17:00 Central European Time (CET)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 4257 ("HCLS").
- IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC)
- Duration: ~1h
- Convener: Susie
Agenda
- Data updates - All
- Mapping experimental data - Susie
- Outreach (TCM, W3C LOD Track, ACS) - All
- F2F
- AOB
Minutes
Attendees: Janos, Bosse, Mike, Elgar, Oktie, Robin
<Susie> Data Updates
<Susie> Susie: I have no updates
<Susie> Oktie: No update on my end
<Susie> Oktie: Anja hasn't corrected the links
<Susie> Oktie: I need to work on the linkages
<Susie> Oktie: I hope to do this within a month
<Susie> Oktie: The links from Diseasome, Drugbank, and Dailymed to LinkedCT
<Susie> Oktie: Some trials have changed, so links should be removed
<Susie> Oktie: I've kept the conditions and interventions, so the links don't go to a deadend
<Susie> Oktie: In future should only have one sided links
<Susie> Oktie: Has been discussed on mailing list
<Susie> Susie: Should we look to host the data ourselves?
<Susie> Oktie: The changes should only take a few moments to do
<Susie> Oktie: I last mailed Anja back in February
<Susie> Bosse: Suprised entities are removed from LinkedCT
<Susie> Oktie: Sometimes mistakes are removed, e.g. wrong interventions
<Susie> Oktie: Sometime data is updated
<Susie> Susie: Could you mail Anja again
<Susie> Oktie: Will do
<Susie> Susie: I can then chase if necessary
<Susie> Oktie: Colleagues have posted FDA data in RDF
<Susie> Oktie: Will send a mail to Matthias to see what his plans are
<Susie> Oktie: Will see if my colleagues are still working on the data
<Susie> Janos: Have worked to make RxNorm availablein RDF
<Susie> Janos: Has a little less than 8 million triples in it
<Susie> Janos: Currently just internally available
<Susie> Janos: Need to fix some technical issues
<Susie> Janos: Will present on it in 2 weeks
<Susie> Janos: May be licensing issues
<Susie> Janos: Need UMLS license to use RxNorm
<Susie> Janos: Need to have a conversation with the NLM
<Susie> Susie: Will introduce you to Olivier Bodenreider
<Susie> Susie: Egon working on ChEMBL
<Susie> Elgar: If we talk to Bodenreider about RxNorm, would be interested in finding out if there is a RDF sanctioned version of UMLS
<Susie> Elgar: There have been a number of partially successful attempts to convert UMLS to RDF
<Susie> Susie: Maybe it'd make sense for him to participate in a call
<OktieH> LinkedFDA URL: http://linkeddata.cs.toronto.edu/linkedfda/
<Susie> Susie: Explore best practices for mapping ADNI to RDF
<Susie> Bosse: Sounds interesting
<Susie> Bose: Need to track changes over time
<Susie> Bosse: Spoke to clinical lead today who wanted data from earlier on
<Susie> Bosse: It overlaps with eHRs
<Susie> Bosse: Because eHR also has a time aspect
<Susie> Bosse: An eHR with lots of data is like a longitudinal study
<Susie> Bosse: Allows addition of extra data as needed
<Susie> Oktie: Where dodes the data come from
<Susie> Susie: ADNI data is available through an agreement
<Susie> Susie: Multiple things to think about
<Susie> Susie: relational schema, mapping to RDF, ontology, namespace, URI
<Susie> Robin: Did you think hosting data in the cloud
<Susie> Susie: Yes, and extending to an open innovation center
<Susie> Susie: With open methodologies and recipes
<Susie> Susie: And focus on healthcare data
<Susie> Susie: Next steps
<Susie> Susie: Create wiki page for experimental data
<Susie> Susie: Describe project idea
<Susie> Susie: Outline items we'd need to condsider
<Susie> Susie: Meeting with Cloud folks in 1 month
<Susie> Susie: Will see if they may be interested in collaborating