HCLSIG/LODD/Literature

Related Papers

• 2008
  • Drug Target Identification Using Side-Effect Similarity
  • relationship between protein targets, article “Drug-target network
  • IAO (information artifact ontology)
  • Scope, Completeness, and Accuracy of Drug Information in Wikipedia
  • Tamoxifen to systemic lupus erythematosus: constructing a semantic infrastructure to enable mechanism-based reasoning and inference from drugs to disease
  • LarKC The large knowledge collider: a platform for large scale integrated reasoning and web-search
  • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
  • A framework for characterizing drug information sources
  • Chemical Knowledge for the Semantic Web
  • State of the nation in data integration for bioinformatics
  • Prediction of drug–target interaction networks from the integration of chemical and genomic spaces
  • Drugbank: a knowledgebase for drugs, drug actions and drug targets
  • ChEBI: a database and ontology for chemical entities of biological interest
  • Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks
  • SuperTarget and Matador: resources for exploring drug-target relationships
• 2007
  • Semantic Web approach to database integration in the Life Sciences
  • Drug–target network
  • Ontology-based Data Quality enhancement for Drug Databases
  • ailSemantic Web-based Data Representation and Reasoning Applied to Disease Mechanism and Pharmacology
• 2006
  • Aggregation of bioinformatics data using Semantic Web technology (alternate location)
  • Using semantic web tools to integrate experimental measurement data on our own terms
  • Chemical structure indexing of toxicity data on the Internet: Moving toward a flat world
  • Integration of Biological Data with Semantic Networks

Background Material on Linked Data

• Linked Data: Principles and State of the Art. Summarizes the idea of Linked Data and the development of the LOD project over the last year.
• How to publish Linked Data on the Web Tutorial explaining the technical details of Linked Data and giving an overview of Linked Data publishing tools.
• Linked Data. Original design note by Tim Berners-Lee about the Linked Data principles.
• LOD wikipage. Linked Data related news and events. Subpages list datasets that are published as Linked Data as well as Linked Data browser, search engines and mashups.
• Linked Data on the Web (LDOW2008). Workshop at WWW2008.
• The Semantic Web: New-style data-integration (and how it works for life-scientists too!)
• Facing the Challenges of Data Integration in Biosciences