Rdf-0607
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@prefix : <http://purl.org/net/biordfmicroarray/ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix ex: <http://purl.org/net/biordfmicroarray/ns#> . @prefix ss: <http://purl.org/net/biordfmicroarray/ns#> . @prefix biordf: <http://purl.org/net/biordfmicroarray/id/> . @prefix genbank: <http://bio2rdf.org/affymetrix:> . @prefix stat: <http://purl.org/net/biordfmicroarray/ns#> . ##### gene list 1 (http://public.tgen.org/tgen.org/supplementarydata/neurogenomics/supplementarydata/dunckley_etal/U133_plus_2.0_AD.xls) ##genelist 1 goes from gene1 through gene262 - keeping those in a separate file ##### revised on April 23, to replace "geneexpression" with "expression" ex:gene1 :probe_set_id "225871_at" ; :name "six transmembrane epithelial antigen of prostate 2" ; rdfs:label "STEAP2" ; rdf:type :gene ; :expressed_in ex:sample_list1 . ex:gene2 :probe_set_id "225621_at" ; :name "GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase" ; rdfs:label "ALG2" ; rdf:type :gene ; :expressed_in ex:sample_list1 . ex:signal1 rdf:type :signal ; rdf:value "343.9" . ex:detection1 rdf:type :detection ; rdf:value "A" . ex:sample1 :derives_from biordf:Entorhinal_cortex ; :derives_from biordf:human ; rdfs:label "AD tangle 1" ; rdf:type :sample . ex:experiment1 :has_input_value ex:sample1 ; :has_input_value ex:gene1 ; :has_output_value ex:signal1 ; :has_output_value ex:detection1 . biordf:human :has_disease_state biordf:Alzheimers_disease ; rdf:type :Human . ##Added 20100607 to represent fold change and p-value associated with a microarray experiment ex:microarray_experiment_set1 rdfs:member ex:experiment1 ; :diff_expressed_gene ex:gene1 ; :has_ouput_value ex:fold_change1 . ex:fold_change1 rdf:value "0.6183" ; stat:p_value "0.000016" . ######## gene list 2 (http://public.tgen.org/tgen.org/supplementarydata/neurogenomics/supplementarydata/brain_regions/PCA1_0_98_correlation.xls) ##genelist2 goes from gene 263 through gene 364 - see separate file with all the genes for genelist2 ex:gene263 :probe_set_id "1556743_at" ; :genbank_id "AI732587" ; rdf:type :gene ; :expressed_in ex:sample_list2 ; :expressed_in ex:sample_list3 ; :expressed_in ex:sample_list4 ; :expressed_in ex:sample_list5 ; :expressed_in ex:sample_list6 ; :expressed_in ex:sample_list7 . ex:gene264 :probe_set_id "1557098_s_at" ; :genbank_id "AW593432" ; :name "CDNA clone IMAGE:4812795" ; rdf:type :gene ; :expressed_in ex:sample_list2 ; :expressed_in ex:sample_list3 ; :expressed_in ex:sample_list4 ; :expressed_in ex:sample_list5 ; :expressed_in ex:sample_list6 ; :expressed_in ex:sample_list7 . ex:gene265 :probe_set_id "1557118_a_at" ; :genbank_id "AW236954" ; :name "CDNA clone IMAGE:4812643" ; rdf:type :gene ; :expressed_in ex:sample_list2 ; :expressed_in ex:sample_list3 ; :expressed_in ex:sample_list4 ; :expressed_in ex:sample_list5 ; :expressed_in ex:sample_list6 ; :expressed_in ex:sample_list7 . ex:gene266 :probe_set_id "1558724_at" ; :genbank_id "BM805933" ; :name "Hypothetical protein LOC645478" ; rdfs:label "LOC645478" ; rdf:type :gene ; :expressed_in ex:sample_list2 ; :expressed_in ex:sample_list3 ; :expressed_in ex:sample_list4 ; :expressed_in ex:sample_list5 ; :expressed_in ex:sample_list6 ; :expressed_in ex:sample_list7 . ex:sample_list2 :derives_from biordf:Entorhinal_cortex . ex:sample_list3 :derives_from biordf:Hippocampus . ex:sample_list4 :derives_from biordf:Middle_temporal_gyrus . ex:sample_list5 :derives_from biordf:Posterior_cingulate_cortex . ex:sample_list6 :derives_from biordf:Superior_frontal_gyrus. ex:sample_list7 :derives_from biordf:primary_visual_cortex. ex:experiment2 :has_input_value ex:sample_list2 ; :has_input_value ex:gene2 ; :has_output_value ex:avg_signal1 . ex:avg_signal1 rdf:type :signal ; rdf:value "75.34285714" . ex:microarray_experiment_set2 rdfs:member ex:experiment2 ; :diff_expressed_gene ex:gene263 . ##genelist 3 ex:gene365 :probe_set_id "1569891_at" ; rdfs:label "ATP5A1" ; :genbank_id "BC035703" ; rdf:type :gene ; :expressed_in ex:sample_list8 ; :expressed_in ex:sample_list9 ; :expressed_in ex:sample_list10 ; :expressed_in ex:sample_list11 ; :expressed_in ex:sample_list12 ; :expressed_in ex:sample_list13 . ex:gene366 :probe_set_id "213738_s_at" ; rdfs:label "ATP5A1" ; :genbank_id "AI587323" ; rdf:type :gene ; :expressed_in ex:sample_list8 ; :expressed_in ex:sample_list9 ; :expressed_in ex:sample_list10 ; :expressed_in ex:sample_list11 ; :expressed_in ex:sample_list12 ; :expressed_in ex:sample_list13 . ex:gene367 :probe_set_id "201322_at" ; rdfs:label "ATP5B" ; :genbank_id "NM_001686" ; rdf:type :gene ; :expressed_in ex:sample_list8 ; :expressed_in ex:sample_list9 ; :expressed_in ex:sample_list10 ; :expressed_in ex:sample_list11 ; :expressed_in ex:sample_list12 ; :expressed_in ex:sample_list13 . :sample_list8 :derives_from biordf:Posterior_cingulate_cortex . :sample_list9 :derives_from biordf:Middle_temporal_gyrus . :sample_list10 :derives_from biordf:Hippocampus . :sample_list11 :derives_from biordf:Entorhinal_cortex . :sample_list12 :derives_from biordf:Primary_visual_cortex . :sample_list13 :derives_from biordf:Superior_frontal_gyrus . ex:microarray_experiment_set3 :has_sample_list ex:sample_list8 ; :diff_expressed_gene ex:gene366 ; :has_ouput_value ex:fold_change366 . ex:fold_change366 rdf:value "-4.35782" ; stat:p_value "2.62880*10^-7" ; stat:corrected_p_value "2.6313*10^-7" .