HCLSIG BioRDF Subgroup/Meetings/2011/02-28 Conference Call

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Conference Details

  • Date of Call: Monday, February 28, 2011
  • Time of Call: 11:00 am Eastern Time, 4 pm UK, 5 pm CET
  • Dial-In #: +1.617.761.6200 (Cambridge, MA)

[Note: extremely limited access to European dial in numbers below]

  • Dial-In #: +33.4.26.46.79.03 (Nice, France)
  • Dial-In #: +44.203.318.0479 (Bristol, UK)
  • Participant Access Code: 4257 ("HCLS")
  • IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC), Quick Start: Use http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls for IRC access.
  • Duration: ~1 hour
  • Convener: M. Scott Marshall
  • Scribe: TBD

Agenda

Summary: The Gene Expression Atlas at EBI allows querying across genes, organisms and conditions in which they are differentially expressed. The results from such queries are ranked and curated annotations such as p values, sample information and experimental protocol information are also available. I will report on the work we have been doing to RDFize this data using the publicly available web services alongside the EBI's application ontology, EFO, which describes experimental variables using numerous community reference ontologies.

  • Datasets to request from ArrayExpress? - All
  • Microarray RDF, Getting started on the W3C note - All
  • AOB
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