June 20, 2011
- Presentation: Anita de Waard, Elsevier Labs.
- The Executable Paper Challenge - Slides: http://www.slideshare.net/anitawaard/executable-papers
6.1.1 June 20, 2011 • Presentation: Anita de Waard, Elsevier Labs. • The Executable Paper Challenge - Slides: http://www.slideshare.net/anitawaard/executable-papers • http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20110620
Attendees: Tim Clark, Jodi Schneider, David Shotton, Scott Marshall, Eric Prud’hommeux
10:06 Anita http://www.slideshare.net/anitawaard/executable-papers 10:07 mscottm For free open source screen sharing software (Michel Dumontier is hosting an instance on his server that we've used a few times now), checkout Big Blue Button. 10:11 mscottm http://www.slideshare.net/anitawaard/executable-papers 10:19 jodi that sounds lovely! 10:20 jodi http://www.slideshare.net/anitawaard/executable-papers/6 10:20 jodi Stephen Wan, Cecile Paris, Robert Dale, Michael Muthukrishna, Ilya Anisimoff and Julien Blondeau, Australia, “Citation Sensitive In-Browser Summarisation of Cited Documents” 10:42 Anita Tim: making things executable puts requirements on the code authors 10:43 Anita Tim: is this a journal or a platform? Anita: I think thinking of it as a journal is an exciting thought 10:43 Anita Tim: how do you get academic credit for this? 10:44 Anita E.g. Open Access in Computer Science: http://www.sciencedirect.com/science/journal/18770509 10:44 Anita http://www.sciencedirect.com/science/journal/18770509 10:46 Anita Scott: relieved to hear Carole was a judge - very relevant to the Wf4ever project 10:47 Anita mscottm: have been thinking a lot if someone makes a programmatic assertion: Publish assertion -> refer to program code e.g. nanopublication on SNPs, where is code? Can we point to it? 10:48 Anita mscottm: Refer to code as evidence to where results came from; have a file that it runs in, go to registry, give back a URI? provide provenance to code when you query in SPARQL 10:48 Zakim -??P21 10:49 Tim this has a number of implications for design of "nanopublications" - 10:58 Anita DavidShotton: concept of a data journal: wrapper around a data set - more than a pointer to the executable component 10:59 Anita DavidShotton: would be easier to start with the lightweight model - or go to an existing journal and change that? 10:59 Anita ericP: I have some code, making a web service; not making any claim about what form the data is in 11:02 davidshotton SADI? 11:03 Anita E.g. take SADI and put publication credentials around it - now you can cite it, use it in a workflow, now nicely self-described, I get props 11:03 Anita http://sadiframework.org/content/ 11:05 jodi https://sites.google.com/site/executablepaper/ 11:07 jodi http://openrepositories.org/ 11:07 jodi http://dataconservancy.org/ 11:08 davidshotton Dryad is requesting input on how to accommodate archiving of software and other non-data content in Dryad: http://blog.datadryad.org/ 11:10 jodi http://www.dcc.ac.uk/
Tim Clark is interested in joining. Jodi Schneider also.
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