W3C

- DRAFT -

W3C HCLS – Pharmacogenomics

01 Mar 2012

See also: IRC log

Attendees

Present
EricP, [IPcaller], michel, matthias_samwald, Helena, mscottm2
Regrets
Chair
Michel
Scribe
egonw

Contents


<egonw_> hi, I just called in, but my sounds does not seem to work

<egonw_> I know

<egonw_> my sounds doesn't work today

<egonw_> I CAN SHOUT?

<mscottm2> "passcode is not valid" - calling from Skype, will keep trying

mscottm2: skype into US number worked for me today

Use Cases

<michel> http://www.w3.org/wiki/HCLSIG/Pharmacogenomics/Use_Cases

<mscottm2> re: skype to US number - I only get "this passcode is not valid". Have tried many times now. Can someone (Egon?) skype me in?

<mscottm2> I'm 'mscottm' in Skype.

oh, sorry to hear that...

mscottm2: can you approve my contact request?

I'm trying a trick...

<mscottm2> I'm in - thanks!

cool!

mscottm2 is sharing my skype dial in connection :)

(I had trouble now and then with the passcode too)

I'm looking up the thesis by my former colleague at KI, Rebecca

who did interesting research on cancer / expression data

mixing that with other omics data

<michel> perfect

PharmGKB update

<michel> https://github.com/bio2rdf/bio2rdf-scripts

<michel> http://bio2rdf.semanticscience.org:8006/describe/?url=http%3A%2F%2Fbio2rdf.org%2Fpharmgkb%3A637880534&sid=2

<michel> http://bio2rdf.semanticscience.org:8006/describe/?url=http%3A%2F%2Fbio2rdf.org%2Fpharmgkb%3A637880536&sid=2

well, this is the thesis, but I cannot find more info right now... http://scholar.google.com/citations?view_op=view_citation&hl=en&user=v-WKQKMAAAAJ&citation_for_view=v-WKQKMAAAAJ:W7OEmFMy1HYC

redialing in...

no, I'm not...

out of credit :/

<mscottm2> I'd offer my credit but Zakim won't accept my dual tone touch tones from Skype 5.6

<mscottm2> I'd offer my credit but Zakim won't accept my dual tone touch tones from Skype 5.6 (windoze)

<mscottm2> I'll try dialing in again just in case..

<michel> http://bio2rdf.semanticscience.org:8006/describe/?url=http%3A%2F%2Fbio2rdf.org%2Fpharmgkb%3A655384748&sid=3

ah, i'm back

mscottm2: ericP helped me dial in, by calling my phone

<matthias_samwald> https://docs.google.com/spreadsheet/ccc?key=0AiGT-vnkGcoLdG5TWlM5QjV1dXpyTXNsMndxazBDQUE#gid=0

i requested access

<matthias_samwald> its is part of the PGx group. Please give us your google id and i will try to add you.

<matthias_samwald> this will also give you access to a heap of other files in that group.

lost sound

back

and gone again

back

:)

<matthias_samwald> @egon: please read my two messages above.

ack

matthias_samwald: sent a request

ericP++

<mscottm2> I'm back on - thanks ericP!

:)

<michel> ACTION: lena to develop worked example of using SWObjects on the dbSNP hosted on michel's servers. [recorded in http://www.w3.org/2012/03/01-HCLS-minutes.html#action01]

<mscottm2> http://s5.semanticscience.org/phpmyadmin/db_structure.php?server=1&token=fb6c92412137ef32f936580d32a3ea78&db=dbsnp&table=&lang=en-utf-8&collation_connection=utf8_general_ci

<Helena> https://docs.google.com/document/d/1UJK9GPqnd3z7fl38s19UPyP3wblMoTlcmlw261L1ETc/edit?disco=AAAAAEIaHkM

OK, I have to leave in a few minutes...

I just want to mention that I have to relearn which task force I should participate in...

I'm now in a new group, starting this year, working for Open PHACTS

I will have more time for semweb for life sciences

as this is part of what is done in this group

here in Maastricht there is also systems biology, but I'm trying to get a colleague (Andra) in on that

he's making a RDF version of wikipathways

last year I worked on things more similar to this...

ok, leaving

<michel> http://www.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html

bye all

<matthias_samwald> bye

<matthias_samwald> http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html

<matthias_samwald> i guess we can feed the 380 RS IDs into this

<mscottm2> tx again for calling my phone ericP!

Summary of Action Items

[NEW] ACTION: lena to develop worked example of using SWObjects on the dbSNP hosted on michel's servers. [recorded in http://www.w3.org/2012/03/01-HCLS-minutes.html#action01]
 
[End of minutes]

Minutes formatted by David Booth's scribe.perl version 1.136 (CVS log)
$Date: 2012/03/01 17:27:20 $

Scribe.perl diagnostic output

[Delete this section before finalizing the minutes.]
This is scribe.perl Revision: 1.136  of Date: 2011/05/12 12:01:43  
Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/

Guessing input format: RRSAgent_Text_Format (score 1.00)

No ScribeNick specified.  Guessing ScribeNick: egonw
Inferring Scribes: egonw
Default Present: EricP, [IPcaller], michel, matthias_samwald, Helena, mscottm2
Present: EricP [IPcaller] michel matthias_samwald Helena mscottm2
Got date from IRC log name: 01 Mar 2012
Guessing minutes URL: http://www.w3.org/2012/03/01-HCLS-minutes.html
People with action items: lena

WARNING: Input appears to use implicit continuation lines.
You may need the "-implicitContinuations" option.


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