See also: IRC log
http://purl.org/net/biordfmicroarray/demo
http://ui.genexpressfusion.googlecode.com/hg/index.html
<Phil> it seems currently restriction to microarray based gene expression
Scott (retroactively scribing): Repeated goal of W3C note - i.e. to give people confidence in *an* RDF representation and approach. Decide when we go to HTML and version control. What's missing?
Scott: See if we can minimize differences between current representations?
Sudeshna: Make a new one as the standard?
Michael: But we already have enough to work with in the current set of representations.
James: I thought we were simply going to talk about some of the current work and how it can be used and 'cut it loose'.
Tomasz: Ours was meant to be a 'reference point'.
Michael: Yes, 'reference point' sounds better than 'cannonical RDF'.
James: Some news: A student project at EBI is just coming toward the end. Bulk of ArrayExpress in RDF. Not public data yet.
Jim: After using MGED in my IPAW paper, I converted to OBI. It's the MAGETAB2RDF work. Some issues with Limpopo.
James: I could send you (Jim) some stuff for you to take a look at.
Michael: Could you explain what you mean by "there are some limits to the translations"?
James: Some matching of terms isn't perfect.
This is the IPAW paper: http://www.springerlink.com/index/W10740804446172U.pdf
http://krauthammerlab.med.yale.edu/~jpm78/ArrayExpress/E-AFMX-1.rdf.ttl
<james> JM to post info on magetab 2 rdf at arrayexpress once beta is out - credit to Drashtti Vasant and Tony Burdett
<james> http://code.google.com/p/open-biomed/wiki/GeneExpressionAtlas
<james> example queries for gxa rdf
<ericP> i can hear everything, but can't speak up to volunteer
<james> congrats eric
<JimMcCusker> BTW, congrats, eric!
<tomasz> congrats, Eric!
maggots have indeed been revalidated in recent years for keep wounds healing faster (they clean it up)
Scott: Somebody brought up the need to deal with NGS and I agree. But that means more work..
<JimMcCusker> I have to drop off for a prov WG call. If you need anything from me towards the paper, let me know.
ok, thanks Jim
<sudeshna> http://cufflinks.cbcb.umd.edu/
<tomasz> James: get it out for feedback for community as soon as possible
<tomasz> I second that!
<Phil> http://www.bioinformatics.auckland.ac.nz/workshops/NGS-workshop-update.pdf
<Phil> slide 81
<tomasz> thanks, bye
<sudeshna> bye
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