15:05:03 <RRSAgent> RRSAgent has joined #HCLS
15:05:03 <RRSAgent> logging to http://www.w3.org/2011/10/24-HCLS-irc
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15:06:25 <mscottm2> Zakim, who is here?
15:06:25 <Zakim> sorry, mscottm2, I don't know what conference this is
15:06:27 <Zakim> On IRC I see sudeshna, james, RRSAgent, Zakim, Phil, matthias_samwald, michael, az2rdf, mscottm2, egonw, Tomasz, ericP
15:06:33 <mscottm2> Zakim, this is biordf
15:06:33 <Zakim> ok, mscottm2; that matches SW_HCLS(BioRDF)11:00AM
15:07:49 <mscottm2> https://docs.google.com/document/d/1A5-3tOsifPWPpETBKU-ZA9d7O7wK_nBzTFUBEe-0Bzo/edit?authkey=CK-y8Y8C
15:09:05 <Zakim> + +1.301.275.aadd
15:13:12 <Zakim> - +1.301.275.aadd
15:15:44 <mscottm2> http://purl.org/net/biordfmicroarray/demo
15:16:12 <mscottm2> http://ui.genexpressfusion.googlecode.com/hg/index.html
15:16:15 <tomasz> tomasz has joined #hcls
15:16:59 <Zakim> +??P0
15:18:01 <Phil> it seems currently restriction to microarray based gene expression
15:20:56 <Zakim> -??P0
15:21:04 <mscottm2> Scott (retroactively scribing): Repeated goal of W3C note - i.e. to give people confidence in *an* RDF representation and approach. Decide when we go to HTML and version control. What's missing?
15:22:39 <Zakim> +??P9
15:22:45 <tomasz> tomasz has joined #hcls
15:25:35 <mscottm2> Scott: See if we can minimize differences between current representations?
15:25:54 <mscottm2> Sudeshna: Make a new one as the standard?
15:26:36 <mscottm2> Michael: But we already have enough to work with in the current set of representations.
15:27:23 <mscottm2> James: I thought we were simply going to talk about some of the current work and how it can be used and 'cut it loose'.
15:28:14 <mscottm2> Tomasz: Ours was meant to be a 'reference point'.
15:28:35 <mscottm2> Michael: Yes, 'reference point' sounds better than 'cannonical RDF'.
15:29:16 <matthias_samwald> matthias_samwald has left #hcls
15:30:13 <Zakim> -[IPcaller.a]
15:31:58 <mscottm2> James: Some news: A student project at EBI is just coming toward the end. Bulk of ArrayExpress in RDF. Not public data yet. 
15:32:43 <mscottm2> Jim: After using MGED in my IPAW paper, I converted to OBI. It's the MAGETAB2RDF work. Some issues with Limpopo.
15:33:36 <mscottm2> James: I could send you (Jim) some stuff for you to take a look at.
15:34:39 <mscottm2> Michael: Could you explain what you mean by "there are some limits to the translations"?
15:35:15 <mscottm2> James: Some matching of terms isn't perfect.
15:36:30 <mscottm2>  This is the IPAW paper: http://www.springerlink.com/index/W10740804446172U.pdf
15:37:07 <mscottm2>  http://krauthammerlab.med.yale.edu/~jpm78/ArrayExpress/E-AFMX-1.rdf.ttl
15:37:40 <mscottm2> http://swbig.googlecode.com
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15:37:47 <james> JM to post info on magetab 2 rdf at arrayexpress once beta is out - credit to Drashtti Vasant and Tony Burdett 
15:42:12 <Zakim> +Tom
15:42:47 <ericP> Zakim, Tom is really ericP
15:42:47 <Zakim> +ericP; got it
15:43:56 <james> http://code.google.com/p/open-biomed/wiki/GeneExpressionAtlas
15:44:06 <james> example queries for gxa rdf
15:45:37 <ericP> i can hear everything, but can't speak up to volunteer
15:45:52 <james> congrats eric
15:45:56 <JimMcCusker> BTW, congrats, eric!
15:46:29 <tomasz> congrats, Eric!
15:51:34 <mscottm2> maggots have indeed been revalidated in recent years for keep wounds healing faster (they clean it up)
15:52:25 <mscottm2> Scott: Somebody brought up the need to deal with NGS and I agree. But that means more work..
15:53:17 <Zakim> -ericP
15:54:36 <Zakim> +ericP
15:56:09 <JimMcCusker> I have to drop off for a prov WG call. If you need anything from me towards the paper, let me know.
15:56:29 <Zakim> -[IPcaller]
15:56:51 <mscottm2> ok, thanks Jim
15:57:10 <mscottm2> Zakim, who is talking?
15:57:21 <Zakim> mscottm2, listening for 10 seconds I heard sound from the following: ??P8 (75%), +1.206.732.aacc (37%), ??P25 (37%)
15:59:44 <sudeshna> http://cufflinks.cbcb.umd.edu/
16:03:51 <tomasz> James: get it out for feedback for community as soon as possible
16:03:55 <tomasz> I second that!
16:04:42 <Zakim> -ericP
16:05:42 <Phil> http://www.bioinformatics.auckland.ac.nz/workshops/NGS-workshop-update.pdf
16:05:45 <Phil> slide 81
16:08:53 <Zakim> -??P25
16:09:04 <tomasz> thanks, bye
16:09:05 <Zakim> - +44.122.349.aabb
16:09:06 <Zakim> - +1.206.732.aacc
16:09:08 <Zakim> -??P8
16:09:08 <Zakim> - +62427aaaa
16:09:09 <Zakim> -??P9
16:09:09 <Zakim> SW_HCLS(BioRDF)11:00AM has ended
16:09:09 <sudeshna> bye
16:09:10 <Zakim> Attendees were [IPcaller], +62427aaaa, +44.122.349.aabb, +1.206.732.aacc, +1.301.275.aadd, ericP
16:09:59 <mscottm2>   RRSAgent, please draft minutes
16:09:59 <RRSAgent> I have made the request to generate http://www.w3.org/2011/10/24-HCLS-minutes.html mscottm2
16:10:03 <mscottm2>   RRSAgent, please make log world-visible
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