<scribe> scribenick: ericP

Task Force Updates

mscottm: [BioRDF update]
... moved ahead on w3c note

<michel> scott - biordf group

mscottm: Jim McKusker will speak next week about his approach to microarrays
... appears that the best path is req RDF form of expression atlas (array express) as well as NIF's geo sets
... we have a MAGETAB rep of genelists
... @@1 has volunteered to make an RDF form of Michael Miller's gene lists
... Sudeshna Das produced a table comparing different constructions and identifiers
... exposes some of the diffs, begs the question of why there are so many
... [Term update]
... Term calls moved to Fridays
... working on location coding
... e.g. clock coords, vs. latterality
... hoping to write a proposal for NIH funding

ericP: [NIH/NCI update]
... DOOOOOOOM
... NCI's Semantic Infrastructure work was cancelled on 31 March

mscottm: [SciDisc update]

joanne: Anita was here [RPI] for 1½ days

mscottm: Tim Clark is planning some meeting
... previous week: Anita asked me to present to SciDisc
... tried to drag in @@2 and Barend Mons (CWA)
... Barend presented on nano publications
... .. ascribes provenance/conditions to assertions
... .. publishing atomic ideas provides an agile assertion framework
... .. interest from Nature

michel

mscottm: [LODD update]
... submitted "Merging best practices for linked live data"
... considering re-formulating as a w3c note
... just has a presentation: Experiences with http://thebiogrid.org/

michel: [TM update]
... guess presentation on Oscar (hamilton EHR/EMR system )
... focused on getting a pharmacogenomics paper
... RDF coding for pharmacogenomics

joanne: i've been barnstorming for folks to take up TMO
... presentation to AMIA
... used TMO demo to show what Sem Techs can do
... reminded people about the underlying tech
... given no users, pitched it as a capabilities demo
... would like to get real users to help us develop
... i know folks are using I2B2, but i don't know where we fit

mscottm: could show use cases linking real patient data to rest of cloud (e.g. LODD)
... IOInformatics gave us some U Columbia patient data

joanne: kidney transplant rejection rate vs. blood-based biomarker
... found some Indivo fake patients from Childrens'

<mscottm> UBC data = Univ. of British Columbia

joanne: Indivo challenging folks to create apps using this patient data

mscottm: note that the UBC data mistakes intensity data for fold change
... expecting mass spec data

joanne: so how do we use it?

mscottm: could use it to test our Indivo pipeline and extend Indivo's expressivity
... this data comes spreadsheets or RDF

ericP: could transform to TMO with SPARQL CONSTRUCT

HCLS Survey

<joanne> repost the URI the survey

-> http://www.w3.org/2007/06/HCLSForm HCLS Survey

<joanne> did W3C hire someone for HCLS biz dev?

( http://www.w3.org/2007/06/HCLSForm-js is cooler looking )

<joanne> --- hey guys, i need a bio break ;)

<joanne> i'm going to be on the TMO call about 10 minutes late --- please make some notes here about the pistoia discussion

<joanne> how big is it? org and individuals?

<joanne> i'm stepping off now -- will be a little late on TMO

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Inferring Scribes: ericP

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Got date from IRC log name: 07 Apr 2011
Guessing minutes URL: http://www.w3.org/2011/04/07-hcls-minutes.html
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