15:01:15 <RRSAgent> RRSAgent has joined #hcls
15:01:15 <RRSAgent> logging to http://www.w3.org/2011/04/07-hcls-irc
15:01:28 <ericP> Zakim, move hcls to here
15:01:28 <Zakim> ok, ericP; that matches SW_HCLS()11:00AM
15:01:33 <Zakim> +EricP
15:02:48 <michel> michel has joined #hcls
15:03:03 <Zakim> +EricP.a
15:03:07 <ericP> Zakim, please disconnect ericP
15:03:07 <Zakim> EricP is being disconnected
15:03:08 <Zakim> -EricP
15:03:15 <Zakim> -EricP.a
15:03:47 <Zakim> +EricP
15:04:18 <mscottm> Zakim, who is here?
15:04:18 <Zakim> On the phone I see mscottm, [IPcaller], EricP
15:04:19 <Zakim> On IRC I see michel, RRSAgent, epichler, Zakim, mscottm, ericP
15:04:22 <Zakim> +??P20
15:04:28 <michel> zakim, ??P20 is michel
15:04:29 <Zakim> +michel; got it
15:05:04 <ericP> Zakim, [IPcaller] is matthias
15:05:15 <Zakim> +matthias; got it
15:06:00 <Zakim> + +1.781.431.aaaa
15:07:23 <ericP> Zakim, aaaa is epichler 
15:07:24 <Zakim> +epichler; got it
15:08:10 <Zakim> +Joanne
15:13:34 <mscottm> Zakim, pick a scribe
15:13:34 <Zakim> Not knowing who is chairing or who scribed recently, I propose epichler
15:14:04 <ericP> scribenick: ericP
15:14:14 <ericP> topic: Task Force Updates
15:14:39 <ericP> mscottm: [BioRDF update]
15:14:45 <ericP> ... moved ahead on w3c note
15:14:47 <michel> scott - biordf group 
15:15:11 <ericP> ... Jim McKusker will speak next week about his approach to microarrays
15:15:14 <joanne> joanne has joined #hcls
15:16:19 <ericP> ... appears that the best path is req RDF form of expression atlas (array express) as well as NIF's geo sets
15:16:46 <ericP> ... we have a MAGETAB rep of genelists
15:17:15 <ericP> ... @@1 has volunteered to make an RDF form of Michael Miller's gene lists
15:18:03 <ericP> ... Sudeshna Das produced a table comparing different constructions and identifiers
15:18:29 <ericP> ... exposes some of the diffs, begs the question of why there are so many
15:18:43 <ericP> mscottm: [Term update]
15:18:59 <ericP> ... Term calls moved to Fridays
15:19:39 <ericP> ... working on location coding
15:19:58 <ericP> ... e.g. clock coords, vs. latterality
15:20:39 <ericP> ... hoping to write a proposal for NIH funding
15:21:06 <ericP> ericP: [NIH/NCI update]
15:22:38 <ericP> ... DOOOOOOOM
15:24:10 <ericP> ... NCI's Semantic Infrastructure work was cancelled on 31 March
15:24:37 <ericP> mscottm: [SciDisc update]
15:25:07 <ericP> joanne: Anita was here [RPI] for 1½ days
15:25:24 <ericP> mscottm: Tim Clark is planning some meeting
15:25:52 <ericP> ... previous week: Anita asked me to present to SciDisc
15:26:16 <ericP> ... tried to drag in @@2 and Barend Mons (CWA)
15:27:00 <ericP> ... Barend presented on nano publications
15:27:22 <ericP> ... .. ascribes provenance/conditions to assertions
15:28:20 <ericP> ... .. publishing atomic ideas provides an agile assertion framework
15:28:27 <ericP> ... .. interest from Nature
15:28:54 <ericP> michel
15:29:06 <ericP> mscottm: [LODD update]
15:29:20 <ericP> ... submitted "Merging best practices for linked live data"
15:29:50 <ericP> ... considering re-formulating as a w3c note
15:30:19 <ericP> ... just has a presentation: Experiences with http://thebiogrid.org/
15:30:29 <ericP> michel: [TM update]
15:30:52 <ericP> ... guess presentation on Oscar (hamilton EHR/EMR system )
15:31:08 <ericP> ... focused on getting a pharmacogenomics paper
15:31:40 <ericP> ... RDF coding for pharmacogenomics
15:32:04 <ericP> joanne: i've been barnstorming for folks to take up TMO
15:32:25 <ericP> ... presentation to AMIA
15:32:38 <ericP> ... used TMO demo to show what Sem Techs can do
15:32:48 <ericP> ... reminded people about the underlying tech
15:33:12 <ericP> ... given no users, pitched it as a capabilities demo
15:33:32 <ericP> ... would like to get real users to help us develop
15:33:56 <ericP> ... i know folks are using I2B2, but i don't know where we fit
15:35:48 <ericP> mscottm: could show use cases linking real patient data to rest of cloud (e.g. LODD)
15:36:11 <ericP> ... IOInformatics gave us some U Columbia patient data
15:37:03 <ericP> joanne: kidney transplant rejection rate vs. blood-based biomarker
15:37:49 <ericP> ... found some Indivo fake patients from Childrens'
15:38:16 <mscottm> UBC data = Univ. of British Columbia
15:38:42 <ericP> ... Indivo challenging folks to create apps using this patient data
15:39:52 <ericP> mscottm: note that the UBC data mistakes intensity data for fold change
15:40:08 <ericP> ... expecting mass spec data
15:40:25 <ericP> joanne: so how do we use it?
15:41:12 <ericP> mscottm: could use it to test our Indivo pipeline and extend Indivo's expressivity
15:43:08 <ericP> ... this data comes spreadsheets or RDF
15:43:23 <ericP> ericP: could transform to TMO with SPARQL CONSTRUCT
15:46:16 <ericP> topic: HCLS Survey
15:47:11 <joanne> repost the URI the survey
15:47:29 <ericP> -> http://www.w3.org/2007/06/HCLSForm HCLS Survey
15:47:31 <joanne> did W3C hire someone for HCLS biz dev?
15:48:08 <ericP> ( http://www.w3.org/2007/06/HCLSForm-js is cooler looking )
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16:00:29 <joanne> --- hey guys, i need a bio break ;)
16:01:11 <joanne> i'm going to be on the TMO call about 10 minutes late --- please make some notes here about the pistoia discussion
16:01:23 <joanne> how big is it? org and individuals?
16:01:57 <joanne> i'm stepping off now -- will be a little late on TMO
16:03:15 <Zakim> -michel
16:03:34 <Zakim> -mscottm
16:03:36 <ericP> RRSAgent, please draft minutes
16:03:36 <RRSAgent> I have made the request to generate http://www.w3.org/2011/04/07-hcls-minutes.html ericP
16:03:38 <Zakim> -EricP
16:03:40 <Zakim> -epichler
16:03:42 <Zakim> -matthias
16:03:56 <matthias_samwald> matthias_samwald has joined #hcls
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16:07:11 <epichler> epichler has left #HCLS
16:08:37 <Zakim> disconnecting the lone participant, Joanne, in SW_HCLS()11:00AM
16:08:40 <Zakim> SW_HCLS()11:00AM has ended
16:08:41 <Zakim> Attendees were mscottm, EricP, michel, matthias, +1.781.431.aaaa, epichler, Joanne
17:38:27 <Zakim> Zakim has left #hcls
20:43:41 <RRSAgent> RRSAgent has joined #hcls
20:43:41 <RRSAgent> logging to http://www.w3.org/2011/04/07-hcls-irc
20:43:44 <mscottm>   RRSAgent, please make log world-visible
21:16:15 <ericP> mscottm, fixed