scribenick Bob

<Amit> #HealthIT HHS inv wkshp on Next Gen Interop for Health attended by key policy makers, PCAST http://bit.ly/dIaki0 & #semanticweb on agenda

Amit: Workshop organized by HHS

<Amit> My talk w/ Ora on #semanticweb for 360deg health: http://slidesha.re/health360 at HHS inv workshop for Health Interop #knoesis #HealthIT

Michel: Home stretch for the paper

<Amit> is there a draft to look at - just for my fyi

Christi and Joanne discuss Latex etc

Jim McCusker is suggesting to look at http://docs.latexlab.org/

Michel: Response to reviewers

Joanne: All addressed

Christi can relax now.

Michel: Great job everybody! Papers are good motivators for getting concrete done.

<Amit> even if it is too late for me to contribute for this one, can I get a sneak peek?

Michel: Requirements for AMIA preparation

Joanne: No deadline. Challenge is how to demo an ontology
... talk is March 8, session at 10:30AM
... perhaps show what queries you can answer w/wOut

Michel: Longitudinal queries
... db or recorded side effects. Sider may not have timelines
... at granularity of query, presentation on a timeline, what data will appear?

<Joanne> check this out: http://sparql.tw.rpi.edu/?page_id=57

Michel: timelines more interesting than spatial data

<Joanne> http://sparql.tw.rpi.edu/

Joanne: We have started some visualizations here

<michel> http://sparql.tw.rpi.edu/?p=32

<michel> timeline demo

Scott: Two datasets have come: one from IO Informatics, kidney transplant data

<michel> scott: triplemap - sneak preview

Scott: includes microarray data
... also proteomics data for those patients
... Another source of data is UPitt, gotten approval for 1000s records of clincial reports
... gathered for NLP research

<michel> http://nlp.dbmi.pitt.edu/nlprepository.html

relates also to Terminology concern w. clinical reports

scribe: thru Richard there is a whole load of data available to uus

Michel: Relfinder(?) tool

<mscottm> Fullname: Richard Boyce, of Univ. of Pittsburgh

Joanne: i2b2 challenge is really an NLP challenge
... interesting if we could show how semweb fits here

<Joanne> https://www.i2b2.org/NLP/DataSets/Main.php

<Joanne> https://www.i2b2.org/NLP/Coreference/Call.php

Michel: Amit, how should we present integrating patient data w. LOD?

<Joanne> it deals with discharge summaries

Amit: Do you have a handle on the quality?

Michel: There are corresponding references into LODD

Amit: Need to look at if from the perspective of the clinician
... see it in a doctor's use case scenario
... why am I paying the doctor if he's just googling? :)
... need a new, very specific use case.
... and also handle the quality of the outcome, plus timeliness
... otherwise hazard: CS telling us what to do!

Michel: How does this IT really help

<Amit> http://knoesis.wright.edu/library/download/S+2008-ASEMR-chapter6.pdf

Amit: Deployed Jan 2006, still being used

<Joanne> They are complementary, the clinician and the computer

<Joanne> that is the fear - being told what to do, which is one reason that decision SUPPORT is more accepable

Amit: Clinicial wants to see a result in 15 min, time is the cost driver

<Joanne> You're paying the doctor to look at the patient. Because the clician's eyes are trained - they can see if you look sick, feel your energy. computers are no supbstitue for that (- though I can imagine some skin sensors and combination of biometrics)

Amit: Start out w. something that grabs them

Michel: We seem to be focussed more for clinical research rather than clinical practice
... perhaps we are in a mid-range rather than in clinical practice

Amit: Demonstrate on chemo-genetics.
... number of adverse events or number of drugs to be considered can be drastically reduced
... look at the quality of results (better Type 1 performance?)

<Amit> http://knoesis.org/library/demos/

Amit: Ex of how semantic solution improved the quality

Joanne: AMIA would be awesome
... demonstration! would be awesome

<Joanne> https://docs.google.com/present/edit?id=0ARi7AC7gwFMMZGhja3J0NTRfMjgxYzZtaHBqZjY&hl=en&authkey=COSpo7oL

Michel: Scott and I want to work on SNPs
... URIs for APOE.

Scott: Matthias is also interested

Michel: We should have a discussion re SNP. Previously did some work re depression
... Adrian Coulet also has a model for SNPs
... start collecting models for SNP representation
... AOG

AOB

Scott: What to do w. new data

Michel: Maybe start wiki pages for better focus
... will create page for SNPs

<Joanne> You should have access to the presentation google doc now- pls check

Joanne: Partner-up w. a hospital, more direct involvement?

Michel: Chime.
... CPR will re-start shortly

Joanne: Look at i2b2 challenge too

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