See also: IRC log
<mscottm> having trouble connecting..
<Tim> scott
<Tim> any idea why I cannot get Zakim to recognize Sci Disc
<sudeshna> http://esw.w3.org/File:SWAN-myExp.pdf
<sudeshna> http://esw.w3.org/File:Mappings.pdf
<sudeshna> Interpretation - purely coming up with a claim - analysis that has already been done and future that should be done
<sudeshna> Chnage the model - leave out interpretation
<sudeshna> Analysis has_output claims
<sudeshna> and add human interpretation as a subclass of analysis
<Tim> http://www.ddialliance.org/specification/ddi3.0
<Tim> This is DDI model
<Tim> have a look at the OBI mappings
<sudeshna> make experiental factor subclass of factor
<johnM> hi scott i will be on momentarily
hi John - wrapping up in BioRDF
Daniel Rubin is there too
College of American Pathologists Cancer ...
?
John: want to describe (structure of) pathology reports
Daniel: want to describe the
quantitative and semantic features in an image (QIM)
... Want to ask How homogeneous is this disease? What are the
common features of this disease?
... Given an image, you can describe the image with features in
ontology/vocabulary.
... pathology could apply similar ideas to images
... using SNOMED, etc.
John: We could use report to
image correlation in pathology
... in the aforementioned project, the radiologist sees
microcalcifications but the pathology report doesn't indicate
it.
... (in the breast cancer context).
Scott: Can we do this with liver data?
Daniel: I can get access to mammogram data.
All: Sounds good!
John: You could turn a document format into a small ontology
Daniel: Can create a SPARQL endpoint to the mammogram database
John: Let me put together a
description of the package that would come with that data
(pathology report, etc.).
... and I'll send it in e-mail.
Scott: Maybe we could use aTags to mark up a pathology or other report
Matthias: I would be happy to take a look at that.
Daniel: I will e-mail a radiology report to Matthias.
<matthias_samwald> my mail address is samwald@gmx.at
dlrubin@stanford.edu
<matthias_samwald> http://ontowiki.net/Projects/OntoWiki
Daniel: Checking on the workflow: We can probably get to work most quickly by using an 'aTags approach' (manually producing RDF annotations that are extracted and added to a triple store) instead of putting reports into databases first and adding SPARQL endpoints
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