13:59:23 <RRSAgent> RRSAgent has joined #hcls2
13:59:23 <RRSAgent> logging to http://www.w3.org/2010/06/14-hcls2-irc
13:59:35 <CGI729> Zakim, this is scidisc
14:00:00 <CGI729> RRSAgent, please draft minutes
14:00:00 <RRSAgent> I have made the request to generate http://www.w3.org/2010/06/14-hcls2-minutes.html CGI729
14:00:08 <CGI729> RRSAgent, please make log world-visible
14:02:33 <Tim> Tim has joined #HCLS2
14:02:50 <sudeshna> sudeshna has joined #HCLS2
14:03:26 <mscottm> mscottm has joined #hcls2
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14:04:00 <Tim> Zakim, this is scidisc
14:04:01 <Zakim> sorry, Tim, I do not see a conference named 'scidisc' in progress or scheduled at this time
14:04:02 <mscottm> having trouble connecting..
14:04:25 <Tim> Zakim, this is SciDisc
14:04:25 <Zakim> sorry, Tim, I do not see a conference named 'SciDisc' in progress or scheduled at this time
14:04:31 <Tim> scott
14:04:52 <Tim> any idea why I cannot get Zakim to recognize Sci Disc
14:05:00 <Tim> RRSAgent, please draft minutes
14:05:00 <RRSAgent> I have made the request to generate http://www.w3.org/2010/06/14-hcls2-minutes.html Tim
14:05:06 <Tim> RRSAgent, please make log world-visible
14:07:12 <mscottm> Zakim, this is SciDis
14:07:12 <Zakim> sorry, mscottm, I do not see a conference named 'SciDis' in progress or scheduled at this time
14:09:20 <david_newman> david_newman has joined #hcls2
14:10:03 <sudeshna> http://esw.w3.org/File:SWAN-myExp.pdf
14:10:32 <sudeshna> http://esw.w3.org/File:Mappings.pdf
14:23:06 <sudeshna> Interpretation - purely coming up with a claim - analysis that has already been done and future that should be done
14:37:19 <sudeshna> Chnage the model - leave out interpretation
14:38:13 <sudeshna> Analysis has_output claims
14:41:24 <sudeshna> and add human interpretation as a subclass of analysis
14:48:10 <Tim> http://www.ddialliance.org/specification/ddi3.0
14:48:15 <Tim> This is DDI model
14:56:37 <Tim> have a look at the OBI mappings
15:01:00 <sudeshna> make experiental factor subclass of factor
15:50:32 <johnM> johnM has joined #hcls2
15:50:49 <johnM> zakim, this will be term
15:50:49 <Zakim> ok, johnM; I see SW_HCLS(TERM)12:00PM scheduled to start in 10 minutes
16:00:57 <mscottm2> mscottm2 has joined #hcls2
16:02:31 <johnM> hi scott i will be on momentarily
16:02:32 <mscottm2> hi John - wrapping up in BioRDF
16:02:43 <mscottm2> Daniel Rubin is there too
16:05:12 <Zakim> SW_HCLS(TERM)12:00PM has now started
16:05:18 <Zakim> +John_Madden
16:05:32 <Zakim> +daniel_rubin
16:05:52 <Zakim> +??P0
16:06:53 <mscottm2> Zakim, ??P0 is mscottm2
16:06:53 <Zakim> +mscottm2; got it
16:09:45 <matthias_samwald> matthias_samwald has joined #hcls2
16:10:51 <Zakim> +??P6
16:11:12 <matthias_samwald> zakim, ??P6 is matthias_samwald
16:11:12 <Zakim> +matthias_samwald; got it
16:16:13 <mscottm2> College of American Pathologists Cancer ...
16:16:15 <mscottm2> ?
16:20:56 <mscottm2> John: want to describe (structure of) pathology reports
16:21:29 <mscottm2> Daniel: want to describe the quantitative and semantic features in an image (QIM)
16:22:09 <mscottm2> .. Want to ask How homogeneous is this disease? What are the common features of this disease?
16:23:10 <mscottm2> .. Given an image, you can describe the image with features in ontology/vocabulary.
16:23:29 <mscottm2> ..pathology could apply similar ideas to images
16:23:45 <mscottm2> ..using SNOMED, etc.
16:24:16 <mscottm2> John: We could use report to image correlation in pathology  
16:25:07 <mscottm2> ..in the aforementioned project, the radiologist sees microcalcifications but the pathology report doesn't indicate it.
16:25:26 <mscottm2> .. (in the breast cancer context).
16:26:16 <mscottm2> Scott: Can we do this with liver data?
16:26:29 <mscottm2> Daniel: I can get access to mammogram data.
16:26:34 <mscottm2> All: Sounds good!
16:27:27 <mscottm2> John: You could turn a document format into a small ontology
16:27:46 <mscottm2> Daniel: Can create a SPARQL endpoint to the mammogram database
16:28:35 <mscottm2> John: Let me put together a description of the package that would come with that data (pathology report, etc.). 
16:30:10 <mscottm2> ..and I'll send it in e-mail.
16:30:44 <mscottm2> Scott: Maybe we could use aTags to mark up a pathology or other report
16:30:58 <mscottm2> Matthias: I would be happy to take a look at that.
16:31:35 <mscottm2> Daniel: I will e-mail a radiology report to Matthias.
16:31:53 <matthias_samwald> my mail address is samwald@gmx.at
16:32:30 <mscottm2> dlrubin@stanford.edu
16:36:46 <Zakim> -John_Madden
16:49:51 <matthias_samwald> http://ontowiki.net/Projects/OntoWiki
16:54:42 <Zakim> -daniel_rubin
16:54:44 <Zakim> -mscottm2
16:55:41 <mscottm2> Daniel: Checking on the workflow: We can probably get to work most quickly by using an 'aTags approach' (manually producing RDF annotations that are extracted and added to a triple store) instead of putting reports into databases first and adding SPARQL endpoints
17:05:00 <Zakim> disconnecting the lone participant, matthias_samwald, in SW_HCLS(TERM)12:00PM
17:05:04 <Zakim> SW_HCLS(TERM)12:00PM has ended
17:05:05 <Zakim> Attendees were John_Madden, daniel_rubin, mscottm2, matthias_samwald
17:07:08 <johnM> rrsagent, draft minutes
17:07:08 <RRSAgent> I have made the request to generate http://www.w3.org/2010/06/14-hcls2-minutes.html johnM
17:07:17 <johnM> rrsagent, make minutes public
17:07:17 <RRSAgent> I'm logging. I don't understand 'make minutes public', johnM.  Try /msg RRSAgent help
17:07:27 <johnM> rrsagent, make log public
17:07:46 <johnM> johnM has left #hcls2
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20:16:31 <mkenned> zakim, this will be term
20:16:31 <Zakim> I do not see a conference matching that name scheduled within the next hour, mkenned
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