see also irc log.
<scribe> scribe: Don
<Susie> Pfizer SWEO use case: http://www.w3.org/2001/sw/sweo/public/UseCases/Pfizer/
Jonathan_Rees: Haven't updated the URI note lately
Susie: Are you getting close to publishing URI note
... as a working draft?
Jonathan: I'm a couple weeks from that.
Susie: How is progress with the SenseLab conversion?
Scott: Can send Matthias document ericP helped with
ACTION: Scott to send note format and tips to Matthias
Matthias_Samwald: Want general document structure...
... What should and shouldn't be there.
M_Scott_Marshall: I'll be taking a good look at the structure.
Susie_Stephens: Scott, do you have the URL for the doc handy?
Susie_Stephens: Areas I think would be good to include...
... Why did we decide to do this?
... What are the advantages of SW over other architectures?
... Highlight a list of data sources.
M_Scott_Marshall: There is a subsection of incorporated databases.
Susie_Stephens: High-level methodology used for kb.
M_Scott_Marshall: Would be nice to have done by Dec. 20th
ACTION: Scott to try to have doc done in two weeks.
Susie_Stephens: We're talking about the note on the HCLS KB.
... What does finished mean?
ericP: We need a version of it before the end of the charter.
... It's easy to update.
Susie_Stephens: Scott, are there section you may assign to other people?
M_Scott_Marshall: Great idea. Susie on the introduction.
ACTION: Susie, write Introduction for HCLS KB Note.
ACTION: Deadline to Introduction...end of this week.
M_Scott_Marshall: Need to decide what issues are describe in how much detail.
Susie_Stephens: Maybe Jonathan can read the section on identifiers.
Jonathan_Rees: Yes, I can do that.
ACTION: Jonathan to read the section on identifiers.
M_Scott_Marshall: We can refer to Jonathan's document.
Susie_Stephens: There's not much on URIs in HCLS KB note. Should Alan or Jonathan take that on?
M_Scott_Marshall: I'll give it a try Jonathan and let me know if that wording is right.
Jonathan_Rees: Okay. Good.
M_Scott_Marshall: I'd like to talk with Matthias about some of the things he brought up on improvements to the knowlege base.
... Perhaps we can work those into the notes.
Susie_Stephens: Eric...Matthias wasn't sure what about the SenseLab conversion should be covered in the note.
ericP: Notes have a consistent template over which you can do what you want.
... I can help coordinating notes.
... Matthias, where is your working doc?
Matthias_Samwald: It's on the Wiki.
Susie_Stephens: That covers the majority I wanted to cover. The new last minute item is Lilly's ontology.
... We'd like feedback from the community, which we've already received.
... Liily very much wants to work with the community on the ontology.
... Would it make sense to talk about coordinating ontologies?
Kei: Do you have any specific type experiment you have in mind?
Susie_Stephens: At the moment, it's a high-level ontology about instrumentation and methodology
... Does not go into experiement details.
M_Scott_Marshall: I'm impressed. This is the kind of sharing we're looking for from the pharma community.
Susie_Stephens: Feedback on the ontology is flowing.
... I viewed the Lilly ontology using Protege
<Susie> I couldn't download OBI from http://obi.svn.sourceforge.net/viewvc/obi/ontology/trunk/OBI.owl?view=log
<ericP> OBI OWL ont appears valid
<matthiassamwald> http://obi.svn.sourceforge.net/viewvc/*checkout*/obi/ontology/trunk/OBI.owl works for me (in Protege 4)
M_Scott_Marshall: Jambalaya is a usefull Protege plug-in
Susie_Stephens: We're working on developing other ontologies. We want to make sure we're...
... working with the community and aligning efforts.
Susie_Stephens: We've put the call out for the HCLS workshop at the WWW.
... Anyone want to mention anything else?
M_Scott_Marshall: The European SW conference coming up.
Susie_Stephens: Alan has people working with him on this.
... ericP is working on a paper.
<ericP> EricP: this way you usally quote people is this "..."
<ericP> ... if they continue, you can prefix with elipsises
<ericP> Don: use Zakim's name?
<ericP> ericP: you can use whatever name you want
<ericP> OBI OWL ont
<ericP> scribenick ericP
<jar> looks like rrsagent isn't on the chat
<ericP> /invite Zakim #BioRDF
<ericP> /invite RRSAgent #BioRDF
<ericP> [call]
<ericP> scribenick ericP
<matthiassamwald> my document is currently at http://esw.w3.org/topic/HCLS/Senselab_Conversion
<mscottm> cvs -d mmarshal@dev.w3.org:/w3ccvs co WWW/2001/sw/hcls/notes/kb/
<matthiassamwald> matthiassamwald
<ericP> msamwald