Semantic Web for Healthcare and Life Sciences F2F Meeting, January
2006
additional sponsors: HP, Teranode
The goals of this meeting are
to:
- Meet and greet each other, become familiar with the broad interest of
this domain grouip, build trust to facilitate collaboration
- Identify SW applications that are applicable to HCLS; establish a
roadmap to publish
- Define and Initiate HCLS Activties for the next several months
by Tonya Hongsermeier and Eric Neumann, co-chairs
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Venue
The meeting was held in Cambridge, MA, Jan 25-26, 2006. See logistics details for exact location, hotel
accomodations etc.
- Agfa-Gevaert N. V.
- Alzheimer's Forum
- June Kinoshita
- Elizabeth Wu
- Bristol-Myers Squibb
- CSIRO Australia
- Chevron
- Harry Ellis
- HP
- Cerebra
- IBM
- Dennis Quan
- Sean Martin
- David Martin
- Steve Boyer
- Jeffrey ?
- Language and Computing
- Merck
- MIND (MassGeneral Institute for
Neurodegenerative Disease)
- MITRE
- Oracle
- Partners HealthCare
- Tonya Hongsermeier
- Vipul Kashyap
- Molly Ullman-Cullere
- Sandy Aaronson (Harvard
Center Genetics and Genomics)
- Pfizer
- REWERSE
- Sandpiper Software
- Science Commons
- John Wilbanks
- Jonathan Rees
- Semagix, Inc
- Siemens AG
- SRI
- Stanford University
- Teranode
- Eric Neumann
- Christoff Poulain
- Matt Shanahan
- University of Manchester
- Robert Stevens
- Joanne Luciano (BioPAX)
- Duncan Hull
- University Health Network (Toronto)
- Invited Experts
- Olivier Bodensreider (National Library of
Medicine)
- Kei-Hoi Cheung (Yale)
- Matthew Cockerill (BioMedCentral)
- Robert Futrelle (Northeastern Univ)
- Marja-Riitta Koivunen
- John Madden (Duke
University and SNOMED Intl)
- Alan Ruttenberg
(Millenium)
- Ian Wilson, (University of
Colorado)
- Xiaoshu Wang (Medical University of South
Carolina)
- Anita de Waard (Elsevier)
- W3C
- Eric Miller, SW lead
- Brian Gilman , team contact
- Tim Berners-Lee, Director
- Steve Bratt, CEO
- Karen Myers
- Amy van der Hiel
Mr. Ralph Hodgson, Dean Allemang of TopQuadrant , Cindy Bailey of Plectix
BioSystem, Mary Chitty of Cambridge HealthTech , Brian Osborne of BioPERL,
anf Jeremy Zucker of Dana Farber attended the meeting as observers; they have
not yet joined the IG.
See also: registration
form
Wed, 25 Jan
Thu, 26 Jan
Presentation Materials and Meeting Records
Presentations
from (most of) the speakers are up on the site. Please send in any remaining presentations to
Brian Gilman!
See: meeting
notes.
Convene, Introductions, Basics (see slides)
- Agenda Overview
- Ground Rules
- Meeting Goals
How Tranlsational Medicine relies on the capture and sharing of
semantically-ware information, and how semantic web applications could help
facilitate this multi-disciplinary paradigm.
Presentations:
Presentation by
Eric Miller on the W3C SW specifications, demonstrations, and some
commercial implmentations.
Presentations:
Use Cases and Applications
10 members of the IG were invited to speak briefly (10 min) to their most
valued use cases and the relation of their work to their constituency.
- Robert Stevens, Applying semantics and ontologies to experimental
data
- Ted Slater, Disease, BioMarkers and Annotation (*no slides used)
- John Wilbanks, Aggregation of Scientific literature
- Dennis Quan, Omics and Integrating Complex Data
- V.Kashyap,
Knowledge Provenance
- Mark
Musen, CBIO
- Joanne
Luciano, BioPax
- John
Madden, Terminology Federation
- Helen
Chen, Personalized medicine and the Electronic Health Record
- Davide
Zaccagnini, Language and Computing
An interactive discussion was moderated by Eric and Tonya to try and form
subtopics of relative similar interest. Six initial areas of
interest were identified. These groups each worked for about an 1 1/2
hours, and then presented their concepts and proposals to all the F2F
participants. Feedback was used to help refine the tasks that were
proposed.
ROI for Semantic Web in HCLS
Intitiated Task Forces
These are the first draft of task forces that have been formed to address
key areas to facilitate implementation of the semantic web in healthcare and
life sciences. Each group is defining its topic of focus, their deliverables,
and a rough timeline. The proposals for each task force are linked below.
- Post meeting material on the site
- Task forces to develop proposals, deliverables and timelines; revise
task forces as needed.
- HCLS Roadmap will be drafted
- Next meetings for 2006 to be determined.
Schedules
- Resolved to have next HCLSIG telcon: (16:00 London /
11:00 Boston / 17:00 Paris / 08:00am SF) on
9th Feb 2006
Change Log
These are the changes since v1.0 from the announcement:
$Log: f2f-summary.html,v $
Revision 1.9 2006/02/10 01:19:42 eneumann
added Tonya's slides
Revision 1.8 2006/02/08 21:17:52 eneumann
eneumann fixed Zaccagnini.ppt link
Revision 1.7 2006/02/08 18:07:59 eneumann
eneumann edited f2f-summary.html
Revision 1.6 2006/02/07 23:32:26 eneumann
eneumann edited f2f-summary.html
Revision 1.5 2006/02/07 23:12:23 eneumann
eneumann edited f2f-summary.html
Revision 1.2 2006/02/07 23:04:48 eneumann
eneumann edited f2f-summary.html
Revision 1.1 2006/02/07 17:41:32 eneumann
eneumann added f2f-summary and presentations
Revision 1.0 2006/01/02 15:35:26 eneumann