Introductions

ian: Working on tools to represent phenotypes.
... Mostly about plants, but ultimate goal is to create generalized tools for many species.
... Once we have phenotypes in these ontologies we can look at similarites across species.
... Trying to extract associations between a gene and a phenotype.
... If we can calculate similarities in phenotypes then we can detect those associations.
... Also detect members of the same pathway.
... Two gene components of the same network might impact the phenotype in different ways, but it may be the same phenotype.

eric: What about different phenotypes caused by different pathways?
... Looked at http://openbel.org/?

ian: Using PLATO (Phenotype and trait ont)

(Rob Hausam joined)

david: May have to cancel today, because Harold wasn't able to make it.

rob: subclass relationships are indicated in the HL7 vocabularies sometimes

FHIR value sets

eric: How to write in OWL the HL7 subsumption in a FHIR value set?
... What would be a non-controversial example?
... Typically you get 3 results from a lab culture (1 hr, 1 day, 1 week). Is each one not final?

rob: DiagnosticReportStatus has hierarchy in it already, but not AMENDED as subtype of FINAL.
... Could be changed

http://build.fhir.org/valueset-diagnostic-report-status.json.html

<scribe> ACTION: Rob Hausam to look for a more compelling example of subsumption in HL7 terminology

http://build.fhir.org/valueset-condition-clinical.html

david: We'll pick up this topic next week when Harold is able to join.

ADJOURNED