practical drug knowledge in a semantic environment.
@prefix : <http://rdf.farmbio.uu.se/chembl/onto/#> . act:a108377 :onAssay ass:a50464 . ass:a50464 :hasTarget p:t53 . p:t53 :hasKeyword "Isomerase" . act:a108377 :extractedFrom rsc:r6368 . rsc:r6368 bibo:pmid pubmed:15125947 . act:a108377 :forMolecule mol:m258506 . mol:m258506 bo:smiles "COC(=O)[C@@H]1C[C@@H](CN1)NCc2n[nH]c3cccc(OCc4ccc(cc4)C(C)(C)C)c23" . act:a108377 :standardUnits "ug mL-1" .
@prefix edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> . @prefix foaf: <http://xmlns.com/foaf/0.1/> . @prefix galen: <http://www.co-ode.org/ontologies/galen#> . @prefix snomed: <http://termhost.example/SNOMED/> . <encounter7> edns:patient <patient3> ; edns:screeningBP <s20090714c> . <patient3> r:type galen:Patient ; foaf:family_name "Levin" ; foaf:firstName "Henry" . <s20090714c> dc:date "2009-07-14T18:23"^^xsd:dateTime ; edns:systolic "132"^^edns:mmHg ; edns:diastolic "86"^^edns:mmHg .
@prefix edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> . @prefix foaf: <http://xmlns.com/foaf/0.1/> . @prefix galen: <http://www.co-ode.org/ontologies/galen#> . @prefix snomed: <http://termhost.example/SNOMED/> . <encounter7> edns:patient <patient3> ; edns:screeningBP <s20090714c> . <patient3> r:type galen:Patient ; foaf:family_name "Levin" ; foaf:firstName "Henry" . <s20090714c> dc:date "2009-07-14T18:23"^^xsd:dateTime ; edns:systolic "132"^^edns:mmHg ; edns:diastolic "86"^^edns:mmHg ; edns:posture snomed:_163035008 . # SNOMED:sitting
SERVICE <http://uu3.org:8888/7tm_receptors> { ?iuphar iface:family ?family . ?iuphar iface:code ?code . ?iuphar iface:iupharName ?iupharNm . ?human iface:iuphar ?iuphar . ?human iface:geneName "GABBR1" . ?human iface:entrezGene ?humanEntrez . } SERVICE <http://dbpedia.org/sparql?default-graph-uri=http%3A%2F%2Fdbpedia.org&should-sponge=&> { _:gene dbp:entrezgene ?humanEntrez ; rdfs:label ?label ; FILTER (lang(?label) = "en") } GRAPH <http://hcls.deri.org/atag/data/gabab_example.html> { ?topic rdfs:label ?label . ?post sioc:topic ?topic }
@prefix edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> . @prefix foaf: <http://xmlns.com/foaf/0.1/> . @prefix galen: <http://www.co-ode.org/ontologies/galen#> . @prefix snomed: <http://termhost.example/SNOMED/> . <encounter7> edns:patient <patient3> ; edns:screeningBP <s20090714c> . <patient3> r:type galen:Patient ; foaf:family_name "Levin" ; foaf:firstName "Henry" . <s20090714c> dc:date "2009-07-14T18:23"^^xsd:dateTime ; edns:systolic "132"^^edns:mmHg ; edns:diastolic "86"^^edns:mmHg ; edns:posture snomed:_163035008 . # SNOMED:sitting
PREFIX edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX galen: <http://www.co-ode.org/ontologies/galen#> PREFIX snomed: <http://termhost.example/SNOMED/> SELECT ?date ?systolic ?diastolic WHERE { ?encounter edns:patient ?patient ; edns:screeningBP ?screenBP . ?patient foaf:family_name "Levin" ; foaf:firstName "Henry" . ?screenBP dc:date ?date ; edns:systolic ?systolic ; edns:diastolic ?diastolic ; } ORDER DESC BY ?date
PREFIX edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX galen: <http://www.co-ode.org/ontologies/galen#> PREFIX snomed: <http://termhost.example/SNOMED/> SELECT ?date ?systolic ?diastolic WHERE { ?encounter edns:patient ?patient ; edns:screeningBP ?screenBP . ?patient foaf:family_name "Levin" ; foaf:firstName "Henry" . ?screenBP dc:date ?date ; edns:systolic ?systolic ; edns:diastolic ?diastolic ; edns:posture ?posture . FILTER (?posture = snomed:_163035008 || ?posture = snomed:_163035009) } ORDER DESC BY ?date
PREFIX edns: <http://www.loa-cnr.it/ontologies/ExtendedDnS.owl#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX galen: <http://www.co-ode.org/ontologies/galen#> PREFIX snomed: <http://termhost.example/SNOMED/> SELECT ?date ?systolic ?diastolic ?posture WHERE { ?encounter edns:patient ?patient ; edns:screeningBP ?screenBP . ?patient foaf:family_name "Levin" ; foaf:firstName "Henry" . ?screenBP dc:date ?date ; edns:systolic ?systolic ; edns:diastolic ?diastolic . OPTIONAL { ?screenBP edns:posture ?posture . } } ORDER DESC BY ?date
X is a drug. What's that mean?
How do people talk about the same thing?
What entities do these identifiers identify?
What are the relationships between these entities?
how long does this take?
What capitol incentives are there for maintenance/improvement?
provides interface to LODD
Best Practices: Mapping Experimental Data to RDF
LeeF's SPARQL tutorial on Semantic Universe
Find me all the people in Tim Berners-Lee's FOAF file that have names and email addresses. Return each person's URI, name, and email address.
PREFIX foaf: <http://xmlns.com/foaf/0.1/> SELECT * WHERE { ?person foaf:name ?name . ?person foaf:mbox ?email . }
Try it with HP's ARQ, OpenLink's Virtuoso, or Redland's Rasqal. (Expected results.)
<?xml version="1.0"?> <ClinicalDocument transformation="hl7-rim-to-pomr.xslt"> <recordTarget> <patientRole> <patientPatient> <name> <given>Henry</given> <family>Levin</family> </name> <administrativeGenderCode code="M"/> <birthTime value="19320924"/> </patientPatient> </patientRole> </recordTarget> <component> <StructuredBody> <Observation> <code displayName="Cuff blood pressure"/> <effectiveTime value="200004071430"/> <targetSiteCode displayName="Left arm"/> <entryRelationship typeCode="COMP"> <Observation> <effectiveTime value="200004071530"/> <value value="132" unit="mm[Hg]"/> </Observation> </entryRelationship> </Observation> <Observation> <code displayName="Cuff blood pressure"/> <effectiveTime value="200004071530"/> <targetSiteCode displayName="Left arm"/> <entryRelationship typeCode="COMP"> <Observation> <code displayName="Systolic BP"/> <effectiveTime value="200004071530"/> <value value="135" unit="mm[Hg]"/> </Observation> </entryRelationship> <entryRelationship typeCode="COMP"> <Observation> <code displayName="Diastolic BP"/> <effectiveTime value="200004071530"/> <value value="88" unit="mm[Hg]"/> </Observation> </entryRelationship> </Observation> </StructuredBody> </component> </ClinicalDocument>
http://someheathprovider.example/patientVisits/C1#info
http://someheathprovider.example/patientVisits/C1#info
provider:C1 role:patient provider:P1 .
provider:C1 role:patient provider:P1 .
http://someheathprovider.example/roles#patient
ISO 8601 datetimes
provider:P1 role:birthdate "1946-11-03"^^xsd:date .