HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103

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Scientific Discourse Meeting, January 23, 2012

Notes:

1. Use case 1 status, Rich Boyce:

  • gearing up for the C-SHALS presentation
  • in abstract we talked about a conceptual prototype for 2 packages, this is now available
  • Now going through the process of building a linked data set and revamping prototype in Linked Data standard
  • Current prototype: what does Package Insert enhanced with scientific literature look like? Now, want to mark up a paper, take annotations and bring into Linked Data graph and link to section in Package insert for two drugs
  • code will be posted here
  • Project page for the code here
  • Road map with milestones, are dividing among themselves
  • Now have all the structured product labels in the code repository and scientific articles for 2 drugs at C-SHALS
  • Met with Pieder Caduff to discuss XPharm/Pharmapendium to discuss details; figuring out protocol for this
  • Should talk to Provenance group; as Elsevier opens up Pharmapendium we should bring in some provenance markup to identify where data comes from - is Satellite standard compliant with new provenance standard?

Anita to do: look at Satellite and PROV overlap Rich: at noon I will have a few full-text annotated with Sapienta will send it around

2. Use case 2 , David Shotton -

  • Stripped out information re. infectious disease - diagram mibio.png sent around earlier
  • Form to fill in is here can generate a report in the middi format in XML; recently at a hackathon people repurposed this format to describe cancer research papers
  • Now want to share with rest of the team and see what next steps are

Q Anita how can this be used? A: david: can accompany article as a supplementary file; can be published separately e.g. as a pointer to the article or as a submission to e.g. Dryad or other data repository

3. Use case 3

  • No news, ask Joanne Luciano for update next general meeting

4. Next calls:

  • We'll keep 4-week general call schedule
  • Next general call February 20: Anita will invite someone from the PROV group to present [1]
  • Next week (January 30, 2012): Paolo Ciccarese will present re. DOMEO

Agenda:

1. Enhance Drug-mechanism Knowledge in Drug Product Labels

  • Team: Richard Boyce, Maria Liakata, Jodi Schneider, Mike Taylor, Anita de Waard

2. Defining core metadata for describing biomedical investigations

  • Team: Tim Clark, Susanna-Assunta Sansone, David Shotton, Philippe Rocca-Serra

3. Mining Treatment Outcomes

  • Team: Joanne Luciano, Anita de Waard

4. Any other business, next calls.

Dial-in & IRC Information:

  • Time: 10:00 EDT
  • Dial-In #: +1.617.761.6200 (Cambridge, MA)
  • Dial-In #: +33.4.26.46.79.03 (Paris, France)
  • Dial-In #: +44.203.318.0479 (London, UK)
  • Participant Access Code: 42572 ("HCLS2")
  • IRC Channel: irc.w3.org port 6665 channel #HCLS2 use IRC direct link or (see W3C IRC page for details, or see Web IRC)
  • Mibbit quick start: Click on mibbit for instant IRC access
  • Duration: 1hr