Example of connecting FHIR/RDF to external ontology

eric: Could connect to FMA, then ask questions like "is this a member of this class"?

gopi: Created a decision support ont in OWL. Plan to go back and use FHIR RDF data. Not annotating data with an external ont, but using another model with FHIR data. But I have plans for SNOMED terms.

ken: Are you developing specific FHIR profiles based on FHIR resources? Where do you capture the data for your instance of FHIR RDF?

gopi: Haven't started yet, but will be using FHIR Observations.
... If there's a diagnostic criteria of pain on left side of face, but there is pain on the left cheek, then that should qualify.

<ericP> http://xiphoid.biostr.washington.edu/fma/fmabrowser-hierarchy.html?search=Arm&entryPoint=none&extendHierarchy=false

<ericP> http://build.fhir.org/observation-example-bloodpressure.ttl.html

<ericP> fhir:CodeableConcept.coding [ a fma:999 ]

eric: I pulled up the FMA identifier for upper arm. If we look at that observation, and at body site (half way down the page), that's a right arm. If I could get the FMA identifier out, I could say that it has an additional codeable concept body site
... Then I would have upper arm. I could then ask for BP measurements on this limb.

ken: Could use Gopi's example with that.

<ericP> http://build.fhir.org/observation-example-bmd.ttl.html 71341001:272741003=7771000 tumor density left femur

<scribe> ACTION: Gopi to report on the progress of his work [recorded in http://www.w3.org/2017/06/06-hcls-minutes.html#action01]

<trackbot> Error finding 'Gopi'. You can review and register nicknames at <http://www.w3.org/2014/HCLS/track/users>.

<scribe> ACTION: Eric to look at FHIR examples for potential use with FMA ontology [recorded in http://www.w3.org/2017/06/06-hcls-minutes.html#action02]

<trackbot> Created ACTION-87 - Look at fhir examples for potential use with fma ontology [on Eric Prud'hommeaux - due 2017-06-13].

Mini-ontology generation for status codes and other codes (Harold Solbrig)

ken: Is there an ont of status codes?

eric: Not sure.

dbooth: The point is to have more clarity about the relationships between status codes.
... And formally capture them in ontology.
... Rob Hausam is bringing that discussion back to the vocab group.

ken: If you group status codes (such as final) are there rules around that?

eric: Yes, though we'd be unlikely to go outside of OWL.
... So you cannot mix individuals and classes.

ADJOURNED

This is scribe.perl Revision: 1.152  of Date: 2017/02/06 11:04:15  
Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/

Guessing input format: Irssi_ISO8601_Log_Text_Format (score 1.00)

Succeeded: s/discuss/discussion/
Present: EricP David_Booth Gopi Ken_Lord
No ScribeNick specified.  Guessing ScribeNick: dbooth
Inferring Scribes: dbooth
Found Date: 06 Jun 2017
Guessing minutes URL: http://www.w3.org/2017/06/06-hcls-minutes.html
People with action items: eric gopi