W3C

HCLSIG Apr 20 Telecon

20 Apr 2006

Agenda

See also: IRC log

Attendees

Present
Bodenreider, Emiller, Eric_Neumann, Joanne_Luciano, Cheung, SusieS, PatC, Tanya_Hongsermeier, Kensaku_Kawoto, Alan, ScottM, HelenC, DonD
Regrets
Chair
EricN and TonyaH
Scribe
EricM

Contents


 

 

Propose next HCLS call May 4, 2006, nominate a scribe

Resolved: next HCLS call May 4, 2006

scribe: Chair to be EricN, Tonya to scribe

Convene, take roll, review record

Introductions - New participants since last call.

Kensaku_Kawoto: I'm new... recent PhD grad and interested in connecting some of this work with HL7

Update on Tasks from BIORDF group

SusieS: several active tasks
... one being led by AlanR
... Alan has been working on Alzforum and has work on antibody to RDF translation

<alanr> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks/Reagents

<alanr> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks/Reagents/Status_Reports/2006-04-17

SusieS: another task is Senselab task (senselab to RDF)

<PatCroke> PatC back again

SusieS: goal to use D2RQ to expose data as RDF
... another task (led by BrianO) ... convert SMID to RDF
... information about chemical compounds
... giving task overview next monday at BioRDF call
... also NCBI entre data to RDF
... OMIM task (and update on Davide's NLP work)

<alanr> biordf tasks are at http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks

<Don> I'm now on the call but must go to a meeting at 11:30.

<Helen> Eric, this link seems not working yet http://www.w3.org/2001/sw/hcls/ontologies/reagent.owl#

<alanr> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup

<eneumann> NIST chem database http://xpdb.nist.gov/hivsdb/advanced_query.htm

EricN: re Brian's task (??) i think there is some connections with folks from NIST

<scribe> ACTION: EricN to connect BrianO's task work and folks from NIST [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action01]

EricN: How soon can these tasks be completed?

<Don> Don Doherty is on the phone.

SusieS: these have 3 month completion points... we've made significant progress on several of these and should have these wrapped up soon

<eneumann> Kei, are you considering converting BrainML into an RDF form? Bill Bug would probably be interested in discussing this with you

<Don> Unfortunately I must go. I hope to see some of you Monday at the Human Brain Project meeting...

<Don> Washington, D.C. Bye!

Update on Tasks from Ontology group

<alanr> could someone record putting up asn parsing code as task for alanr

Update on Tasks from BIORDF group

<alanr> rather "action item"

ericn: will send XLST scripts for OMIM, SNP, etc.

<gilmanb> that's SNP's

<gilmanb> :-)

<gilmanb> Single Nucleotide Polymorphisms

<gilmanb> the stuff that makes us different

<alanr> +1 to em's suggestion

<Zakim> em, you wanted to encourage trip reportd

Update on Tasks from Ontology group

vipul: focus on our group is use cases and going top down
... use case task being Ken and Don

(pointer to task?)

<eneumann> ACTION: introduce Bill Bug to Kei Cheung via email wrt BrainML [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action02]

Action2=EricN to introduce Bill Bug to Kei Cheung via email wrt BrainML

vipul ... focus has been on information requirements; what sort of queries

<vipul> http://esw.w3.org/topic/HCLS/ParkinsonUseCase

vipul: from the use cases, we start to see a rudimentary ontology
... the thought then is to think about a common ontology / framework and map existing ontologies into it

<gilmanb> I'll be right back

<alanr> http://esw.w3.org/topic/HCLS/OntologyTaskForce/Ontologization_for_Transitive_Closure_Inferences/Examples

:)

<alanr> google: Results 1 - 10 of about 532 for ontologization

<alanr> google hears about more stuff :)

:)

<alanr> suggestion for snomed is to export using each of the 3 patterns

http://esw.w3.org/topic/HCLS/ParkinsonUseCase

<scribe> ACTION: AlanR to review http://esw.w3.org/topic/HCLS/ParkinsonUseCase and see if BioRDF task for translating data to RDF provide answers to questions being asked [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action03]

<scribe> ACTION: SusieS to review http://esw.w3.org/topic/HCLS/ParkinsonUseCase and see if BioRDF task for translating data to RDF provide answers to questions being asked [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action04]

<vipul> ACTION; Vipul to follow up with Alan, Tonya and Susie on identifiying intersection points

<Tonya> Tonya will review BioRDF Task for intersection points with CDS aspects of Ontology Use Cases, provide feedback

<scribe> ACTION: Vipul to follow up with Alan, Tonya and Susie on identifiying intersection points between BioRDF and ONT use case task [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action05]

<scribe> ACTION: Tonya will review BioRDF Task for intersection points with CDS aspects of Ontology Use Cases, provide feedback [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action06]

action item review

<scribe> ACTION: [CLOSED] Brian keeps discussion going with task forces and places names next to tasks on the wiki [recorded in http://www.w3.org/2006/03/23-hcls-minutes.html#action02]

<scribe> ACTION: [CLOSED] en and brian spell out ROI on the wiki [recorded in http://www.w3.org/2006/03/23-hcls-minutes.html#action01]

-> http://esw.w3.org/topic/HCLSIG/ROI

<scribe> ACTION: [COMPLETED] Eric and Eric will talk to people in Lilly. Try to [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action09]

coordinate with others so a reasonable number of people contact

Lilly. [recorded in http://www.w3.org/2006/04/06-hcls-

minutes.html#action03]

<scribe> ACTION: [CONTINUED] Eric N, Vipul, Tonya talk about the Athens, GA conference and possible organization of workshop. [recorded in http://www.w3.org/2006/04/06-hcls-minutes.html#action05] Tonya to organize a telecon to take next step

<scribe> ACTION: [COMPLETED] Susie to work with Lilly to document their use cases. [recorded in http://www.w3.org/2006/04/06-hcls-minutes.html#action04]

-> http://www.olsug.org/wiki/images/a/a7/Adam_West_Lilly_Oracle_Users_Group_2006-04-03.pdf

<scribe> ACTION: [CONTINUED] Eric Neuman contact David Martin and see if he's the [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action12]

guy with energy around ROI. [recorded in http://www.w3.org/2006/04/06-

hcls-minutes.html#action06]

<vipul> http://iswc2006.semanticweb.org/workshop_tutorial/workshops.htm

<scribe> ACTION: [CONTINUED] Susie to work with Lilly to document their use cases. [recorded in http://www.w3.org/2006/04/06-hcls-minutes.html#action04]

SusieS ... willing to continue work with Lilly and continue developing use case

<alanr> powerpoint can export as html

<alanr> at a minimum save ppt as pdf

<alanr> and post pdf

<gilmanb> pdf

<gilmanb> +1

<vipul> +1

<mscottm> +1

<alanr> please enable deletion of attachments on wiki - otherwise mistake is too much risk

<alanr> plz post email address to irc/email list

<alanr> did call just end?

<gilmanb> darn

<gilmanb> I need to talk to susie

<Zakim> em, you wanted to explore connecting dots between tasks and to

meeting adjounred

Summary of Action Items

[NEW] ACTION: AlanR to review http://esw.w3.org/topic/HCLS/ParkinsonUseCase and see if BioRDF task for translating data to RDF provide answers to questions being asked [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action03]
[NEW] ACTION: EricN to connect BrianO's task work and folks from NIST [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action01]
[NEW] ACTION: introduce Bill Bug to Kei Cheung via email wrt BrainML [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action02]
[NEW] ACTION: SusieS to review http://esw.w3.org/topic/HCLS/ParkinsonUseCase and see if BioRDF task for translating data to RDF provide answers to questions being asked [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action04]
[NEW] ACTION: Tonya will review BioRDF Task for intersection points with CDS aspects of Ontology Use Cases, provide feedback [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action06]
[NEW] ACTION: Vipul to follow up with Alan, Tonya and Susie on identifiying intersection points between BioRDF and ONT use case task [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action05]
 
[PENDING] ACTION: Eric N, Vipul, Tonya talk about the Athens, GA conference and possible organization of workshop. [recorded in http://www.w3.org/2006/04/06-hcls-minutes.html#action05] Tonya to organize a telecon to take next step
[PENDING] ACTION: Eric Neuman contact David Martin and see if he's the [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action12]
 
[DONE] ACTION: Brian keeps discussion going with task forces and places names next to tasks on the wiki [recorded in http://www.w3.org/2006/03/23-hcls-minutes.html#action02]
[DONE] ACTION: en and brian spell out ROI on the wiki [recorded in http://www.w3.org/2006/03/23-hcls-minutes.html#action01]
[DONE] ACTION: Eric and Eric will talk to people in Lilly. Try to [recorded in http://www.w3.org/2006/04/20-hcls-minutes.html#action09]
[DONE] ACTION: Susie to work with Lilly to document their use cases. [recorded in http://www.w3.org/2006/04/06-hcls-minutes.html#action04]
 
[End of minutes]

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$Date: 2006/04/24 20:30:15 $