15:57:44 <RRSAgent> RRSAgent has joined #HCLS
15:57:44 <RRSAgent> logging to http://www.w3.org/2013/01/08-HCLS-irc
15:57:57 <michel> michel has changed the topic to: #hcls  W3C HCLS – General Meeting
15:58:07 <michel> zakim, this is hcls
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15:58:09 <Zakim> michel, I see SW_HCLS()11:00AM in the schedule but not yet started.  Perhaps you mean "this will be hcls".
15:58:15 <michel> zakim, this will be hcls
15:58:15 <Zakim> ok, michel; I see SW_HCLS()11:00AM scheduled to start in 2 minutes
15:58:30 <michel> Chair: michel
15:58:37 <michel> Meeting: W3C HCLS – General Meeting
15:58:53 <bobP> I'll try to get on in ~30 min
15:59:40 <Zakim> SW_HCLS()11:00AM has now started
15:59:50 <michel> zakim, who is here?
15:59:50 <Zakim> On the phone I see no one
15:59:52 <Zakim> On IRC I see bobP, RRSAgent, Zakim, michel, achille_zappa, MacTed, egonw, ericP
15:59:57 <Zakim> + +1.613.293.aaaa
16:00:03 <michel> zakim, aaaa is michel
16:00:03 <Zakim> +michel; got it
16:05:27 <Zakim> + +1.715.389.aabb
16:05:42 <michel> zakim, aabb is simon
16:05:42 <Zakim> +simon; got it
16:06:31 <michel> simon: working on pgx use cases
16:06:58 <michel> ... collected from clinicians from our institutions
16:07:07 <michel> ... are they representative?
16:07:18 <michel> ... sometime in feb
16:07:54 <michel> ... want to use genotype info for selecting drug or determining dosage
16:08:38 <michel> ehr system does not currently support collecting genotype info
16:09:20 <michel> ... vanderbilt, mayo, mtsinai (new york) have something in place / in works to capture genotype
16:09:47 <michel> ... matthias's work is very interesting
16:09:48 <Zakim> +??P37
16:10:10 <michel> zakim, P37 is scott
16:10:10 <Zakim> sorry, michel, I do not recognize a party named 'P37'
16:10:26 <michel> zakim, ??P37 is scott
16:10:26 <Zakim> +scott; got it
16:11:53 <michel> scott: richard's set of queries are quite impressive
16:15:46 <michel> michel: maybe i can present bio2rdf R2 in LLD, invite people to formulate queries and share them
16:16:59 <michel> scott: plan to bring up the catalogue concept in LLD
16:18:06 <michel> http://www.openphacts.org/specs/2012/WD-datadesc-20121019/
16:19:42 <michel> michel: bio2rdf, openphacts, biositemaps, jbcls,
16:20:56 <michel> ... biodbcore
16:25:20 <michel> ... bioportal and uniprot now both provide a SPARQL endpoint - exciting development
16:25:47 <michel> ... ebi hopes to provide biomodels, pride, gxa, chembl
16:28:12 <michel> ... wikipathways provides sparql endpoint?
16:29:21 <Zakim> +Bob_Powers
16:30:19 <egonw> sparql.wikipathways.org
16:30:26 <egonw> catching train
16:30:33 <egonw> will join next time in the general call again
16:32:13 <michel> ... once a month, let's get the RDF data providers to give a presentation on their SPARQL endpoint, queries, etc
16:32:33 <achille_zappa_> achille_zappa_ has joined #hcls
16:32:37 <michel> scott: a lot of people interested in clinical data
16:34:24 <michel> ... representing patient data in rdf
16:40:09 <mscottm> mscottm has joined #hcls
16:42:12 <michel> ... Lloyd McKenzie has developed a RDF+OWL representation of HL7 RIM, able to use OWL reasoning to validate parts of the information model - great development
16:42:33 <michel> ... charlie and eric working hard with many groups, important to start getting this into a public forum
16:42:41 <michel> ... revive and push COI in 2013
16:43:29 <michel> scott: lots of ways to represent disease, ehr
16:45:39 <michel> ... what predicate to use for patient data?
16:48:45 <egonw> egonw has joined #HCLS
16:50:15 <michel> ... jan 22 meeting organized by ehr4cr; involve openphacts, salus, utrikx;
16:50:38 <mscottm> s/utrikx/etriks
16:56:21 <michel> scott: what's happening with lodd?
16:57:59 <mscottm> ehr4cr meeting will also involve EURECA and Linked2safety
16:58:46 <michel> michel: bio2rdf will have all of lodd by june 2013
16:59:05 <michel> ... ckan thedatahub has multiple drugbank entries
16:59:14 <michel> ... we need to update the bio2rdf endpoints there
17:01:55 <Zakim> -simon
17:01:57 <Zakim> -Bob_Powers
17:01:58 <Zakim> -michel
17:02:00 <Zakim> -scott
17:02:02 <Zakim> SW_HCLS()11:00AM has ended
17:02:02 <Zakim> Attendees were +1.613.293.aaaa, michel, +1.715.389.aabb, simon, scott, Bob_Powers
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17:08:39 <mscottm2> Eric Prud'hommeaux: re note, yeah, create the wiki page, populate it with anchors, then add links to those anchors to the IG note (i can do that last step).
17:08:39 <mscottm2> i think the agreed-upon plan was one wiki page with anchors for all the likely sections we'd want to reference. so i guess step 0 is to go through the cur pract doc and figure out what pieces will evolve
17:12:34 <mscottm2> Scott (to Simon): Do we share the same bottleneck of getting patient data from heterogeneous unstructured formats to structured? I would like to associated language patterns and external procedures with ontological concepts in order to accomplish this.
17:12:59 <mscottm2> Simon: Yes, I would be interested in discussing that sometime.
18:06:06 <michel> rrsagent, draft minutes
18:06:06 <RRSAgent> I have made the request to generate http://www.w3.org/2013/01/08-HCLS-minutes.html michel
18:06:12 <michel> rrsagent, make log world-visible
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