17:01:36 <RRSAgent> RRSAgent has joined #hcls2
17:01:36 <RRSAgent> logging to http://www.w3.org/2011/01/27-hcls2-irc
17:01:42 <michel> zakim, this is tmo
17:01:42 <Zakim> ok, michel; that matches SW_HCLS(TMO)11:00AM
17:02:09 <Joanne> Joanne has joined #hcls2
17:02:38 <Zakim> + +46.4.63.3.aadd
17:03:03 <Zakim> +??P38
17:03:06 <Zakim> + +1.617.993.aaee
17:03:24 <michel> zakim, ??P38 is michel
17:03:24 <Zakim> +michel; got it
17:03:57 <bbalsa> bbalsa has joined #HCLS2
17:04:03 <mscottm> mscottm has joined #hcls2
17:04:41 <epichler> epichler has joined #HCLS2
17:04:54 <Zakim> + +1.781.431.aaff
17:05:03 <mscottm> Just got off the metro connected via my droid
17:05:25 <michel> nice
17:05:29 <Zakim> + +1.302.598.aagg
17:07:57 <michel> Dr. Xue Webster new member of the group
17:08:36 <michel> Chemist, PhD in medical informatic; work at Lily is to try and uncover novel hypothesis through data and text mining
17:09:02 <matthias_samwald> matthias_samwald has joined #hcls2
17:09:09 <michel> start with disease of interest, try to identify novel targets - problem of ranking, designing in vivo/in vitro tests
17:09:26 <michel> uses semweb technologies to represent and work with data
17:09:39 <michel> excited to participate, learn and contribute
17:09:54 <mscottm> Welcome Xue!
17:10:00 <Zakim> +??P17
17:10:11 <Christi> Welcome Yue!
17:10:11 <yue> thanks
17:10:15 <matthias_samwald> zakim, ??P17 is matthias_samwald
17:10:15 <Zakim> +matthias_samwald; got it
17:12:12 <michel> https://docs.google.com/document/d/1XoRj-Ysxa0xOX2n3MBNcG7_dT7cEA4C3ITKn3z1rCPc/edit?hl=en&authkey=CJXJhtsP#
17:13:01 <epichler> manuscript: https://docs.google.com/document/d/1sh0lttGpqXZuQL-WxTSqj5ZjMRFeYUciHhkHfqRSrTk/edit?hl=en&authkey=CK7D5YYO#
17:13:18 <epichler> supplement: https://docs.google.com/document/d/1rxLEXSa0E_5GmjYpDvGOs7yNENcBICKvQco8ecaywOg/edit?hl=en&authkey=CI3-m6oE#
17:15:16 <michel> now going over the action items
17:20:40 <michel> suggest Deb McGuiness for R1.2
17:24:22 <michel> synthetic patient data
17:24:23 <michel> https://dvcs.w3.org/hg/TMO-Indivo/file/3334734509e9/syntheticPatients/
17:30:31 <michel> joanne: searching for much more impressive functionality
17:30:48 <michel>  ... question answering is ok, but we need more
17:31:41 <michel> chris: genotype-phenotype data will bring insights
17:32:36 <michel> joanne: news article shows that open data allows for future use
17:32:58 <michel> chris: think of easy to hard questions; could we actually get that out of the data?
17:33:47 <michel> http://esw.w3.org/HCLSIG/PharmaOntology/Roles
17:37:20 <michel> joanne: what's the role of tmo-external.owl
17:37:42 <michel> michel: snapshot of the dependencies at that time - we can ensure consistency with what we develop at that time
17:38:22 <michel> elgar: important practical consideration
17:38:47 <michel>  ... we also did this with the data 
17:40:34 <Zakim> + +62427aahh
17:42:46 <michel> michel: problem with the google doc manuscript
17:44:59 <michel> use case reworking
17:45:37 <michel> bosse - took content from wiki; better to summarize; add to supplement
17:46:16 <mscottm> Zakim, +62427aahh is mscottm 
17:46:16 <Zakim> +mscottm; got it
17:47:05 <mscottm> Zakim, who is here?
17:47:05 <Zakim> On the phone I see +1.317.277.aaaa, +1.317.651.aabb, +1.518.915.aacc, +46.4.63.3.aadd, michel, +1.617.993.aaee, +1.781.431.aaff, +1.302.598.aagg, matthias_samwald, mscottm
17:47:08 <Zakim> On IRC I see matthias_samwald, epichler, mscottm, bbalsa, Joanne, RRSAgent, Zakim, michel, Christi, yue, ericP
17:47:25 <michel> elgar: supplementary materials - do we want queries in the paper or in the supplementary
17:48:25 <michel>  ... more readable if we take out the queries and refer to supplementary material
17:49:36 <Christi> Zakim, +1.317.277.aaaa is Christi
17:49:36 <Zakim> +Christi; got it
17:49:45 <Zakim> -mscottm
17:50:17 <mscottm>  What about putting the quarries into a separate section like the pendix I'm not sure if that was discussed as an option?
17:50:17 <Christi> Zakim, +1.317.651.aabb is yue
17:50:17 <Zakim> +yue; got it
17:50:47 <mscottm> That's from voice recognition
17:51:33 <michel> elgar: problems with the queries - will fix
17:51:55 <Zakim> + +31.62.427.aaii
17:52:05 <michel> michel: scott -> we agreed that we would put queries + answers in the supplementary material
17:52:19 <mscottm> Tx 
17:54:12 <michel> joanne: AMIA - need to create a demonstration - focus on this after the paper
17:54:49 <michel> joanne: how can we demo the value of this work
17:55:15 <michel>  ... so that it gains exposure and importance in that community
17:56:22 <michel> scott: will be in the bay area, but can we schedule it so that he can present it
18:02:19 <Zakim> -matthias_samwald
18:02:22 <Zakim> -Christi
18:02:23 <Zakim> - +1.302.598.aagg
18:02:23 <Zakim> - +31.62.427.aaii
18:02:25 <Zakim> - +1.617.993.aaee
18:02:27 <Zakim> - +1.518.915.aacc
18:02:29 <Zakim> - +46.4.63.3.aadd
18:02:30 <Zakim> -michel
18:02:33 <Zakim> -yue
18:02:34 <Zakim> - +1.781.431.aaff
18:02:36 <Zakim> SW_HCLS(TMO)11:00AM has ended
18:02:39 <Zakim> Attendees were +1.518.915.aacc, +46.4.63.3.aadd, +1.617.993.aaee, michel, +1.781.431.aaff, +1.302.598.aagg, matthias_samwald, mscottm, Christi, yue, +31.62.427.aaii
18:04:54 <michel> rrsagent, draft minutes
18:04:54 <RRSAgent> I have made the request to generate http://www.w3.org/2011/01/27-hcls2-minutes.html michel
18:05:01 <epichler> epichler has left #HCLS2
18:05:03 <michel> rrsagent, make log world-visible