15:02:01 <RRSAgent> RRSAgent has joined #hcls
15:02:01 <RRSAgent> logging to http://www.w3.org/2010/09/13-hcls-irc
15:02:12 <kei> Zakim, this is BioRDF
15:02:12 <Zakim> ok, kei; that matches SW_HCLS(BioRDF)11:00AM
15:02:19 <Zakim> + +1.206.605.aabb
15:02:35 <jodi> http://www.cs.washington.edu/homes/etzioni/
15:02:53 <Zakim> +Kei_Cheung
15:03:14 <mscottm> mscottm has joined #hcls
15:03:38 <ssahoo2> ssahoo2 has joined #HCLS
15:04:42 <Chuck> Chuck has joined #hcls
15:04:59 <Zakim> + +1.216.368.aacc
15:05:05 <Zakim> +mscottm
15:05:13 <Zakim> + +1.414.456.aadd
15:05:20 <Zakim> +??P12
15:05:39 <mscottm> invite Zakim #hcls
15:05:40 <matthias_samwald> zakim, ??P12 is matthias_samwald
15:05:40 <Zakim> +matthias_samwald; got it
15:05:48 <mscottm> invite RRSAgent #hcls
15:05:57 <kei> scribenick satya
15:06:04 <mscottm> Zakim, who is here?
15:06:04 <Zakim> On the phone I see +1.510.387.aaaa, +1.206.605.aabb, Kei_Cheung, +1.216.368.aacc, mscottm, +1.414.456.aadd, matthias_samwald
15:06:07 <Zakim> On IRC I see Chuck, ssahoo2, mscottm, RRSAgent, Zakim, kei, michael, jodi, matthias_samwald, ericP
15:06:32 <ssahoo2> zakim, 1.216.368.aacc is satya
15:06:32 <Zakim> sorry, ssahoo2, I do not recognize a party named '1.216.368.aacc'
15:07:37 <ssahoo2> Kei: Agenda is 1) Introduction of new members, 2) update on SWPM workshop submission, 3) next steps
15:08:15 <mscottm> spelling: Simon Twigger
15:08:48 <ssahoo2> Simon: At U Wisconsin Milwaukee, have a project with NCBO
15:09:05 <ssahoo2> Simon: working on rat project using multiple ontologies
15:09:15 <kei> rat genome project 
15:10:05 <ssahoo2> Simon: Use NCBO annotator tool for processing texts from Rat genome project
15:10:48 <ssahoo2> Simon: Exploring connect phenotype with gene using RDF representation model 
15:13:11 <ssahoo2> Kei: summarizes BioRDF task force activities, including recent initiative on query federation on microarray dataset 
15:14:42 <ssahoo2> Kei: query federation scenario includes provenance metadata describing experiment conditions for microarray datasets
15:15:47 <ssahoo2> Simon: interested in making Rat genome datasets available in RDF format
15:17:12 <ssahoo2> Kei: Update on the paper submitted to the Semantic Web and Provenance Management workshop to be held with ISWC'10
15:17:56 <kei> notification will be announced by sept 24
15:18:34 <ssahoo2> http://wiki.knoesis.org/index.php/SWPM-2010
15:22:31 <ssahoo2> Kei: Next steps include exploring the re-use of existing ontologies for the microarray data query federation scenario
15:24:06 <ssahoo2> Kei: Scott identified Disease ontology as a relevant ontology for the microarray use case
15:26:08 <ssahoo2> Kei: Link current microarray dataset with proteomics or related datasets
15:27:20 <ssahoo2> Kei: extend the SWPM submission to write another paper with a focus on the life sciences or bioinformatics community
15:29:15 <ssahoo2> Scott: contact members of other microarray data providers such as GEO to extend the current dataset
15:30:01 <mscottm> http://lists.w3.org/Archives/Public/public-semweb-lifesci/2010Aug/0022.html
15:30:04 <ssahoo2> Scott: Misha at Gene Atlas has offered to make microarray dataset available to this group
15:32:35 <ssahoo2> Scott: Post a description of current microarray dataset to the HCLS mailing list
15:35:11 <ssahoo2> Kei: Agreement on extending the current work and write a new paper
15:36:17 <ssahoo2> Kei: Identify potential targets for the next paper
15:38:12 <ssahoo2> Satya: potentially extending the SWPM workshop paper to write a journal paper
15:38:25 <mscottm> http://www.swat4ls.org/2010/call.php#overview
15:39:12 <mscottm> 12 October 2010
15:39:19 <ssahoo2> Scott: SWAT4LS workshop is another potential target, accepted paper will be published in BMC bioinformatics
15:44:27 <ssahoo2> Kei: Decide on the alternatives in next couple of days - SWAT4LS, Jounal of Semantic Web, BMC Bioinformatics, PLoS One
15:48:15 <Zakim> -matthias_samwald
15:48:35 <Zakim> - +1.414.456.aadd
15:48:36 <Zakim> - +1.216.368.aacc
15:48:36 <Zakim> - +1.206.605.aabb
15:48:37 <Zakim> -mscottm
15:48:38 <Zakim> -Kei_Cheung
15:48:39 <Zakim> SW_HCLS(BioRDF)11:00AM has ended
15:48:41 <Zakim> Attendees were +1.510.387.aaaa, +1.206.605.aabb, Kei_Cheung, +1.216.368.aacc, mscottm, +1.414.456.aadd, matthias_samwald
15:48:52 <mscottm>   RRSAgent, please draft minutes
15:48:52 <RRSAgent> I have made the request to generate http://www.w3.org/2010/09/13-hcls-minutes.html mscottm
15:48:54 <michael> michael has left #hcls
15:48:56 <mscottm>   RRSAgent, please make log world-visible
15:54:07 <Zakim> SW_HCLS(BioRDF)11:00AM has now started
15:54:14 <Zakim> +Joanne_Luciano
15:54:15 <Zakim> -Joanne_Luciano
15:54:15 <Zakim> SW_HCLS(BioRDF)11:00AM has ended
15:54:17 <Zakim> Attendees were Joanne_Luciano
15:54:48 <Zakim> SW_HCLS(BioRDF)11:00AM has now started
15:54:55 <Zakim> SW_HCLS(BioRDF)11:00AM has ended
15:54:57 <Zakim> Attendees were 
17:36:41 <Zakim> Zakim has left #hcls