16:04:35 <RRSAgent> RRSAgent has joined #hcls
16:04:35 <RRSAgent> logging to http://www.w3.org/2009/01/07-hcls-irc
16:05:21 <mscottm> Zakim, this will be LODD
16:05:21 <Zakim> ok, mscottm, I see SW_HCLS(LODD)11:00AM already started
16:05:26 <Zakim> + +0044173023aagg
16:06:33 <OktieH> OktieH has joined #HCLS
16:06:40 <mscottm> Zakim, 0044173023aagg is enya
16:06:40 <Zakim> sorry, mscottm, I do not recognize a party named '0044173023aagg'
16:06:44 <Zakim> +Don_Doherty
16:06:45 <Susie> http://esw.w3.org/topic/HCLSIG/LODD/Business
16:06:53 <mscottm> Zakim, +0044173023aagg is enya
16:06:53 <Zakim> +enya; got it
16:07:00 <mscottm> Zakim, who is on the phone
16:07:00 <Zakim> I don't understand 'who is on the phone', mscottm
16:07:03 <mscottm> Zakim, who is on the phone?
16:07:03 <Zakim> On the phone I see +1.781.662.aaaa, Scott_Marshall, +0044208291aabb, +46.4.67.7.aacc, +1.203.234.aadd, +1.301.975.aaee, +2aaff, enya, Don_Doherty
16:07:22 <AnjaJentzsch> AnjaJentzsch has joined #hcls
16:07:38 <mscottm> Zakim, enya is AnjaJentzsch
16:07:38 <Zakim> +AnjaJentzsch; got it
16:08:28 <mscottm> Susie: Would like to talk about data sets, key areas today
16:09:20 <mscottm> ..put Don's doc into the Business case section of the wiki
16:11:01 <mscottm> ..Going back to the data, inventorize: What kind of questions would (patients, physicians, pharma) like to ask?
16:13:46 <mscottm> ..Will plan to work on this if that's ok, so that we can identify datasets that support the questions.
16:14:14 <mscottm> Bosse: I would be happy to help.
16:17:28 <mscottm> Donald: I can take a look at the physician's perspective
16:18:23 <mscottm> (Susie and Bosse will look at pharma questions together on Thu)
16:19:53 <mscottm> Susie: patients questions have been looked at by a number of people until now. Is anyone interested in carrying the patient's perspective forward?
16:21:10 <Zakim> + +1.647.839.aahh
16:22:01 <Zakim> - +1.647.839.aahh
16:22:39 <mscottm> Kei: (following up on alternative medicine research with Jun) There are ways to link to additional information associated with alternative therapies such as Chinese herbs.
16:23:13 <Zakim> + +1.647.839.aaii
16:24:00 <mscottm> Chris: Is Jun looking at multiple language mappings such as Chinese to English?
16:24:08 <OktieH> It's me, I'm on the line, but apparently you can't hear me
16:25:03 <mscottm> Chris: We have run into these language issues in DBpedia.
16:25:17 <mscottm> Kei: I will put you in touch with Jun so that she can tell you what she knows when she is back.
16:27:06 <mscottm> Bosse: timeline, goals, publications?
16:29:00 <mscottm> Chris: The deadline for the International Journal for Semantic Web and Information Systems has just been postponed until Jan. 26 but that is probably too early for us.
16:29:35 <mscottm> Susie: I would like to set some goals (dates).
16:30:31 <mscottm> Chris: There is the LOD workshop of the WWW conf in Madrid (deadline Feb 7).
16:33:44 <Donald_Doherty> Please get the Disease spreadsheet from: 
16:33:47 <Donald_Doherty> http://esw.w3.org/topic/HCLSIG/LODD/Business?action=AttachFile
16:33:58 <Donald_Doherty> Either OpenOffice or Excel.
16:34:04 <Donald_Doherty> Thank you Susie!
16:34:55 <mscottm> Susie: What kind of interface could we use to access the data sets?
16:36:52 <mscottm> Chris: A semantic web browser such as Tabulator or Discover(?). Link things via identifiers. A key issue is the business question.
16:38:51 <mscottm> Susie (proposing): Bosse and I get the pharma use case to Chris and Anja by the 16th.
16:39:38 <mscottm> ..Donald will try to get the physician's perspective to Chris and Anja by the 16th.
16:39:50 <mscottm> Matthias: I would like to help Don.
16:40:05 <mscottm> Don: That would be fantastic!
16:40:29 <mscottm> Susie: Chris and Anja convert datasets by the 29th.
16:41:36 <mscottm> ..then, Chris and Anja take the lead on testing by the 29th.
16:42:18 <OktieH> I can also help Chris and Anja if needed
16:42:26 <OktieH> (sorry for my technical problem here)
16:42:29 <mscottm> Chris: Need concrete descriptions of the datasets, handy to get data as 'data dumps'.
16:42:48 <mscottm> Susie: Writing in parallel from the 16th.
16:43:25 <mscottm> ..Would be nice to have clinicaltrials.org as a key feature.
16:43:45 <mscottm> ..Robert Frost's demonstration tomorrow could be relevant.
16:44:27 <mscottm> ..I got notification that Tim Berner's Lee is giving a keynote at (probably C-SHALS).
16:44:50 <mscottm> ..Would like to be able to tell Tim about this so that he can include these plans in his talk.
16:45:11 <AnjaJentzsch> HCLS call tomorrow: http://esw.w3.org/topic/HCLSIG/Meetings/2000-01-08_Conference_Call
16:45:38 <OktieH> Yes
16:46:29 <Susie> http://esw.w3.org/topic/HCLSIG/LODD/Business
16:46:43 <mscottm> Susie: Would like to go through some of the work that Don has been doing.
16:48:33 <mscottm> Don: Please download the Disease spreadsheet. What identifiers in the ontology will list diseases so that we can link through to those.
16:49:48 <mscottm> Don: Starting with OMIM. The OMIM Morbid Map maps diseases to genes and proteins, etc.
16:51:03 <mscottm> Don: Now let's focus on the Drug Ontology (OWL). I have listed key properties.
16:52:03 <mscottm> Chris: Do they use URI identifiers or strings to identify diseases, etc.?
16:53:30 <mscottm> Don: I don't think that they use URI's but it's still a useful list.
16:53:38 <mscottm> Don: ATC codes are used.
16:53:42 <matthias_samwald> ATC -- http://en.wikipedia.org/wiki/Anatomical_Therapeutic_Chemical_Classification_System
16:53:49 <mscottm> http://en.wikipedia.org/wiki/Wikipedia:WikiProject_Pharmacology/Style_guide#Use_ATC_code
16:54:29 <mscottm> Anja: In DBpedia, the same (e.g. ATC code) identifiers are used.
16:59:03 <mscottm> Don: (describes more of the datasets in the spreadsheet)
17:00:22 <mscottm> s/Discover/Disco/
17:01:18 <mscottm> Matthias: Which datasets should we concentrate on?
17:01:32 <mscottm> Susie: We should focus on those that are available.
17:01:44 <mscottm> Kei: Do you mean those avail. in RDF or OWL?
17:02:12 <mscottm> Susie: I mean those that take the least trouble (and are not proprietary).
17:03:31 <Donald_Doherty> Susie. Is there a F2F coming up?
17:03:35 <OktieH> Yes, sorry for this
17:03:43 <OktieH> or feel free to send me an email
17:03:46 <OktieH> The data was in XML
17:03:49 <mscottm> ok, thanks.
17:03:58 <OktieH> I used DB2's XML features to convert it to relational
17:04:02 <OktieH> and then D2R server
17:04:10 <mscottm> Ahh.
17:04:30 <Zakim> - +1.301.975.aaee
17:05:31 <mscottm> Susie: We are aiming to have our F2F next to BioIT World in Boston on Apr. 29, 30, May 1.
17:06:38 <mscottm> Susie: We are planning to coordinate the date of the F2F close to a URI Workshop from Mark Musen at the same location.
17:06:39 <matthias_samwald> --- regarding the table, i think we should move the proprietary datasets to another table.
17:06:42 <matthias_samwald> bye!
17:06:44 <Zakim> -Don_Doherty
17:06:45 <Zakim> - +1.203.234.aadd
17:06:45 <Zakim> -AnjaJentzsch
17:06:46 <Zakim> - +0044208291aabb
17:06:46 <Zakim> - +46.4.67.7.aacc
17:06:48 <Zakim> - +1.781.662.aaaa
17:06:57 <Zakim> - +2aaff
17:07:10 <matthias_samwald> matthias_samwald has left #hcls
17:07:23 <mscottm> RRSAgent, please draft minutes
17:07:23 <RRSAgent> I have made the request to generate http://www.w3.org/2009/01/07-hcls-minutes.html mscottm
17:07:43 <mscottm> RRSAgent, please make log world-visible
17:08:01 <Zakim> -Scott_Marshall
17:13:02 <Zakim> disconnecting the lone participant, +1.647.839.aaii, in SW_HCLS(LODD)11:00AM
17:13:07 <Zakim> SW_HCLS(LODD)11:00AM has ended
17:13:08 <Zakim> Attendees were +1.781.662.aaaa, Scott_Marshall, +0044208291aabb, +46.4.67.7.aacc, +1.203.234.aadd, +1.301.975.aaee, +2aaff, Don_Doherty, AnjaJentzsch, +1.647.839.aahh,
17:13:10 <Zakim> ... +1.647.839.aaii
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