15:00:05 <RRSAgent> RRSAgent has joined #hcls
15:00:05 <RRSAgent> logging to http://www.w3.org/2008/10/02-hcls-irc
15:00:07 <ericP>  /invite RRSAgent #hcls
15:00:13 <ericP> Zakim, this will be hcls
15:00:13 <Zakim> ok, ericP, I see SW_HCLS()11:00AM already started
15:00:33 <Zakim> + +1.781.662.aabb - is perhaps SusieStephens?
15:00:43 <AGibson> AGibson has joined #hcls
15:00:45 <Zakim> +Kingsley_Idehen
15:00:46 <John_M> John_M has joined #hcls
15:00:56 <matthias_samwald> matthias_samwald has joined #hcls
15:01:03 <HelenC> HelenC has joined #hcls
15:01:11 <Zakim> + +1.425.445.aacc
15:01:14 <Zakim> +Sofia_Celic
15:01:26 <Zakim> +??P15
15:01:26 <Jun> Jun has joined #hcls
15:01:30 <kidehen> kidehen has joined #hcls
15:02:04 <Zakim> +Kei_Cheung
15:02:09 <Zakim> +Rinke
15:02:28 <Zakim> +Helen_Chen
15:02:38 <Zakim> + +0186528aadd
15:02:42 <Zakim> +??P33
15:02:53 <kei> kei has joined #HCLS
15:03:05 <cbatchel> Hello, Colin here, about to ring up.
15:03:06 <matthias_samwald> zakim, ??P15 is matthias_samwald
15:03:06 <Zakim> +matthias_samwald; got it
15:03:06 <ericP> Zakim, please dial ericP-office
15:03:07 <Zakim> ok, ericP; the call is being made
15:03:07 <Zakim> +EricP
15:03:22 <ericP> Zakim, please disconnect ericP
15:03:22 <Zakim> EricP is being disconnected
15:03:24 <Zakim> -EricP
15:03:30 <Zakim> + +1.847.832.aaee
15:03:33 <kei> I need to step out for a brief moment and will be back in one minute
15:03:34 <Zakim> + +03120689aaff
15:03:39 <Zakim> + +1.919.681.aagg
15:03:51 <Zakim> +??P40
15:04:21 <matthias_samwald> zakim, who is talking?
15:04:21 <Zakim> + +0122342aahh
15:04:26 <Zakim> +EricP
15:04:31 <Zakim> matthias_samwald, listening for 10 seconds I heard sound from the following: +1.604.628.aaaa (92%), SusieStephens? (57%), Kingsley_Idehen (15%), +0186528aadd (17%), ??P33 (63%),
15:04:34 <Zakim> ... ??P40 (18%)
15:05:04 <John_M> zakim, +1.919.681.aagg is John_M
15:05:04 <Zakim> +John_M; got it
15:05:37 <mscottm>  zakim, mute <name>   | 61#   | Mute my phone    
15:05:37 <Zakim> I don't understand 'mute <name>   | 61#   | Mute my phone', mscottm
15:05:46 <ericP> Zakim, temporarily mute ??P33
15:05:46 <Zakim> ??P33 should now be muted
15:05:58 <Susie> Zakim, pick a scribe
15:05:58 <Zakim> Not knowing who is chairing or who scribed recently, I propose +03120689aaff
15:06:02 <Zakim> ??P33 should now be unmuted again
15:06:20 <mscottm> zakim, unmute <name> | 60#   | Unmute my phone
15:06:20 <Zakim> I don't understand 'unmute <name> | 60#   | Unmute my phone', mscottm
15:06:33 <Susie> Zakim, pick a scribe
15:06:33 <Zakim> Not knowing who is chairing or who scribed recently, I propose SusieStephens?
15:06:42 <Susie> Zakim, pick a scribe
15:06:42 <Zakim> Not knowing who is chairing or who scribed recently, I propose ??P40
15:07:06 <mscottm> zakim, who is on the phone?
15:07:06 <Zakim> On the phone I see +1.604.628.aaaa, SusieStephens?, Kingsley_Idehen, +1.425.445.aacc, Sofia_Celic, matthias_samwald, Kei_Cheung, Rinke, Helen_Chen, +0186528aadd, ??P33,
15:07:10 <Zakim> ... +1.847.832.aaee, +03120689aaff, John_M, ??P40, +0122342aahh (muted), EricP
15:08:13 <ericP> Zakim, +1.604.628.aaaa is MarkW
15:08:13 <Zakim> +MarkW; got it
15:08:26 <matthias_samwald> oops
15:08:33 <matthias_samwald> seems like i misidentified 
15:08:59 <ericP> Zakim, matthias_samwald is really Ted
15:08:59 <Zakim> +Ted; got it
15:09:34 <ericP> Zakim, Zakim ??P40 is Yimen
15:09:34 <Zakim> I don't understand 'Zakim ??P40 is Yimen', ericP
15:09:39 <ericP> Zakim, ??P40 is Yimen
15:09:40 <Zakim> +Yimen; got it
15:09:55 <ericP> queue=
15:10:20 <ericP> Zakim, who is here?
15:10:20 <Zakim> On the phone I see MarkW, SusieStephens?, Kingsley_Idehen, +1.425.445.aacc, Sofia_Celic, Ted, Kei_Cheung, Rinke, Helen_Chen, +0186528aadd, ??P33, +1.847.832.aaee, +03120689aaff,
15:10:23 <Zakim> ... John_M, Yimen, +0122342aahh (muted), EricP
15:10:24 <Zakim> On IRC I see kei, kidehen, Jun, HelenC, matthias_samwald, John_M, AGibson, RRSAgent, Zakim, Susie, mscottm, cbatchel, ericP
15:10:40 <ericP> Zakim, Sofia_Celic is really mscottm 
15:10:42 <Zakim> +mscottm; got it
15:11:00 <ericP> Zakim, +1.847.832.aaee is Mary
15:11:05 <michel> michel has joined #HCLS
15:11:06 <Zakim> +Mary; got it
15:11:14 <ericP> Zakim, +1.425.445.aacc is Mary
15:11:22 <ericP> Zakim, who is here?
15:11:25 <Zakim> +Mary; got it
15:11:32 <Zakim> On the phone I see MarkW, SusieStephens?, Kingsley_Idehen, Mary.a, mscottm, Ted, Kei_Cheung, Rinke, Helen_Chen, +0186528aadd, ??P33, Mary, +03120689aaff, John_M, Yimen,
15:11:34 <ktolle> ktolle has joined #hcls
15:11:38 <Zakim> ... +0122342aahh (muted), EricP
15:11:46 <Zakim> On IRC I see michel, kei, kidehen, Jun, HelenC, matthias_samwald, John_M, AGibson, RRSAgent, Zakim, Susie, mscottm, cbatchel, ericP
15:12:29 <Susie> Zakim, pick a scribe
15:12:35 <Zakim> Not knowing who is chairing or who scribed recently, I propose MarkW
15:12:58 <ericP> Zakim, ??P33 AndrewGibson
15:12:58 <Zakim> I don't understand '??P33 AndrewGibson', ericP
15:13:13 <ericP> Zakim, ??P33 is AndrewGibson
15:13:13 <Zakim> +AndrewGibson; got it
15:13:21 <ericP> Meeting: HCLS
15:13:24 <ericP> Scribe: ericP
15:13:38 <cbatchel> zakim, q-
15:13:38 <Zakim> I see +0122342aahh, ??P33 on the speaker queue
15:14:08 <ericP> agenda+ intros
15:14:08 <ericP> agenda+ f2f agenda
15:14:08 <ericP> agenda+ iswc tutorial
15:14:08 <ericP> agenda+ NCBO workshop
15:14:09 <ericP> agenda+ outreach [scottm]
15:14:20 <ericP> Zakim, take up first agendum
15:14:20 <Zakim> I don't understand 'take up first agendum', ericP
15:14:32 <ericP> Zakim, take up next agendum
15:14:32 <Zakim> agendum 1. "intros" taken up [from ericP]
15:14:45 <Zakim> +??P10
15:14:46 <ericP> MarkW: services on the semantic web
15:14:56 <michel> zakim, ??P10 is michel
15:14:57 <Zakim> +michel; got it
15:14:58 <ericP> MaryK: diagnostic intelligence
15:15:06 <ericP> ... managing entity for SNOMED CT
15:15:31 <ericP> HelenC: researcher for Agfa
15:15:52 <ericP> ... interested in knowledge management/decision support
15:16:00 <ericP> June: oxford
15:16:10 <ericP> ... modeling scientific discourse
15:16:24 <ericP> ted basher: consulting firm
15:16:40 <ericP> ... interested and bioinformatics and Sw
15:16:52 <ericP> yimin: just joined Lilly
15:17:04 <ericP> ... worked with allen recter
15:17:34 <ericP> queue=
15:17:40 <mscottm> Zakim, unmute AndrewGibson
15:17:40 <Zakim> AndrewGibson should no longer be muted
15:18:15 <ericP> Andrew: Univ AMS
15:18:49 <ericP> ... working with a KB targeting proxyzone
15:18:57 <mscottm> ..peroxisome
15:19:02 <ericP> ... interested in semweb tech, particularly OWL
15:19:16 <ericP> s/proxyzone/peroxisome/
15:19:36 <ericP> Zakim, take up next agendum
15:19:36 <Zakim> agendum 2. "f2f agenda" taken up [from ericP]
15:19:52 <ericP> COI: working on end-to-end demo
15:20:17 <ericP> BioRDF [Kei]: 2 presentations:
15:20:43 <ericP> ... .. Olivier [NLM] - UMLS-to-OWL conversion
15:20:48 <cbatchel> zakim, mute cbatchel
15:20:48 <Zakim> sorry, cbatchel, I do not know which phone connection belongs to cbatchel
15:21:09 <ericP> ... .. talk on BioPortal
15:21:19 <ericP> ... talks were complementary
15:21:39 <ericP> ... for next call, invited two groups to talk about domain-specific ontologies
15:22:35 <ericP> Susie: and DERI has agreed to host the HCLS KB
15:22:57 <ericP> Zakim, +0122342aahh is cbatchel
15:22:57 <Zakim> +cbatchel; got it
15:23:04 <cbatchel> ericP, thanks
15:23:18 <ericP> LODD [Susie]
15:23:31 <mscottm> cbatchel, sorry we missed you in the introductions!
15:23:41 <ericP> Susie: applying LOD principles to drug data
15:23:49 <ericP> ... some folks doing literature searches
15:23:55 <mscottm> Maybe we can introduce Colin at the next 'break' in the agenda
15:24:32 <ericP> ... folks charactarizing the datasets technically, legally, logistically, and for currency
15:24:51 <ericP> ... identifying use cases for what we can do when drug data is linked together
15:25:11 <ericP> ... expect to anchor identifiers in dbpedia
15:25:37 <ericP> topic SWAN/Sioc
15:25:59 <ericP> Susie: integrating SWAN and SIOC ontologies. had call on Monday
15:26:24 <ericP> matthias_samwald: agreed to examine schemas and ontologies for the representation of citations
15:26:46 <ericP> ... this week, investigating whether we can use the bibliographic ontology
15:26:54 <ericP> Susie: next call tomorrow
15:27:01 <ericP> topic Terminology
15:27:29 <ericP> John_M: transitioning Sesamy repository to a new server at Duke
15:27:55 <ericP> ... should include a better interpretation of SNOMED CT, using SKOS
15:28:15 <ericP> ... IHSTO (owns SNOMED) having meeting next week in Denmark
15:28:47 <Zakim> -Yimen
15:28:52 <ericP> ... hope to get clarification of what data can be distributed to countries with no SNOMED license
15:29:25 <ericP> ... Mary working on XForms platform on pathologies DB
15:29:47 <ericP> ... expect to use GRDDL to go from XForms reps to RDF
15:30:04 <ericP> mscottm: tell us more about this XForms platform
15:30:29 <ericP> John_M: built on Orbion (Van Der List et all)
15:30:48 <ericP> ... they have an open source model (do consulting for food money)
15:30:55 <ericP> ... it's server-side xforms
15:31:10 <ericP> ... services the forms with some AJAX
15:31:22 <ericP> ... don't need an XForms-capable browser to use the forms
15:31:54 <ericP> ... also have an alpha xforms desinger
15:32:05 <ericP> ericP: endpoing to play with?
15:32:31 <ericP> John_M: have an alpha one with dummy data and schemas
15:32:44 <Susie> http://esw.w3.org/topic/HCLSIG/F2F/2008-10_F2F
15:32:46 <ericP> Zakim, take up next agendum
15:32:46 <Zakim> agendum 3. "iswc tutorial" taken up [from ericP]
15:32:58 <ericP> Zakim, take up agendum 2
15:32:58 <Zakim> agendum 2. "f2f agenda" taken up [from ericP]
15:33:08 <ericP> Susie: agenda getting more concrete
15:33:22 <ericP> -> http://esw.w3.org/topic/HCLSIG/F2F/2008-10_F2F HCLS f2f
15:33:34 <ericP> topic: introductions
15:34:04 <ericP> colin bacholder: interested in representing chemical compounds and [] on the SW
15:34:16 <ericP> topic f2f agenda
15:34:19 <ericP> topic: f2f agenda
15:34:43 <ericP> Susie: expecting a talk from Charlie Mead about what HL7 is/will be
15:35:02 <ericP> ... will get updates on OWL2, RIF
15:35:29 <John_M> specimen xforms: http://tarski.duhs.org:8080/orbeon/fr/orbeon/builder/test/FA0B9FECFD76D0E8DF6A809D7C9E18D8/
15:35:35 <ericP> ... a section on outreach (karen meyers will present on available resources/techniques)
15:35:53 <ericP> ... EricN will give us an update on what he hears
15:35:59 <ericP> ... updates on the task forces
15:36:15 <ericP> ... discuss linkage points between the tasks
15:36:26 <ericP> ... please register ASAP
15:36:57 <cbatchel> ericP, s/[]/journal articles/ (but maybe this ties in with SIOC)
15:37:04 <ericP> -> http://www.w3.org/2002/09/wbs/35125/TPAC2008/ TPAC registration
15:38:42 <ericP> -> http://www.w3.org/Help/Account/?check=1 register for a public account
15:39:00 <ericP> -> http://www.w3.org/2004/01/pp-impl/38539/join join HCLS
15:39:26 <ericP> -> http://www.w3.org/2002/09/wbs/35125/TPAC2008/ register for the TPAC
15:39:53 <ericP> Zakim, take up next agendum
15:39:53 <Zakim> agendum 3. "iswc tutorial" taken up [from ericP]
15:39:55 <Susie> http://esw.w3.org/topic/HCLS/ISWC2008/Tutorial
15:39:57 <ericP> Susie: set speakers for the ISWC tutorial
15:40:15 <ericP> ... slides et all available on the ISWC wiki page
15:40:26 <ericP> -> http://esw.w3.org/topic/HCLS/ISWC2008/Tutorial HCLS ISWC wiki page
15:40:27 <Susie> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call
15:40:33 <ericP> Zakim, take up next agendum
15:40:33 <Zakim> agendum 3 was just opened, ericP
15:40:38 <ericP> Zakim, take up agendum 4
15:40:38 <Zakim> agendum 4. "NCBO workshop" taken up [from ericP]
15:40:58 <kei> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call?action=AttachFile&do=get&target=NCBO_clinical_phenotype_ont.pdf 
15:41:27 <ericP> kei: workshop happened last month
15:41:49 <ericP> ... HCLS well represented: Chimezie and Tim Clark
15:42:51 <ericP> ... more details about the talk on the workshop overview slides
15:43:05 <ericP> -> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call?action=AttachFile&do=get&target=NCBO_clinical_phenotype_ont.pdf workshop overview slides
15:43:18 <HelenC> HelenC has joined #hcls
15:43:22 <ericP> kei: i am involved with BrainPharm
15:43:57 <ericP> ... captures links between neuronal level and the disease level
15:44:14 <ericP> ... integrating data not just from databases, but from different levels
15:44:44 <ericP> ... that's why BrainPharm related to the theme of this WG
15:47:38 <ericP> is whining about a symptom considered a sign?
15:47:56 <mscottm> LOL
15:50:08 <mscottm> Zakim, who is here?
15:50:08 <Zakim> On the phone I see MarkW, SusieStephens?, Kingsley_Idehen, Mary.a, mscottm, Ted, Kei_Cheung, Rinke, Helen_Chen, +0186528aadd, AndrewGibson, Mary, +03120689aaff, John_M, cbatchel
15:50:11 <Zakim> ... (muted), EricP, michel
15:50:12 <Zakim> On IRC I see HelenC, ktolle, michel, kei, kidehen, Jun, matthias_samwald, John_M, AGibson, RRSAgent, Zakim, Susie, mscottm, cbatchel, ericP
15:50:32 <ericP> q+ to ask about state of clinical standardization
15:50:33 <mscottm> Zakim, +03120689aaff is MarcoRoos
15:50:34 <Zakim> +MarcoRoos; got it
15:50:46 <mscottm> Zakim, mute MarcoRoos
15:50:46 <Zakim> MarcoRoos should now be muted
15:55:50 <Zakim> -michel
15:59:56 <ericP> RRSAgent, please draft minutes
15:59:56 <RRSAgent> I have made the request to generate http://www.w3.org/2008/10/02-hcls-minutes.html ericP
16:00:03 <ericP> RRSAgent, please make log world-visible
16:00:41 <ericP> Zakim, take up next agendum
16:00:41 <Zakim> I see a speaker queue remaining and respectfully decline to close this agendum, ericP
16:00:46 <ericP> q?
16:00:49 <ericP> q-
16:00:51 <mscottm> http://www2009.org/ in Madrid, Universidad Politécnica de Madrid co-hosting
16:00:53 <ericP> Zakim, take up next agendum
16:00:53 <Zakim> agendum 3. "iswc tutorial" taken up [from ericP]
16:00:59 <mscottm> Deadline for workshop proposals: Oct. 10
16:01:16 <mscottm> http://www.swat4ls.org/
16:01:36 <ericP> Susie: Scott will be presenting at swat for lifesci (next meeting)
16:01:40 <mscottm> Call for SWAT4LS papers extended until Oct. 13
16:01:48 <mscottm> Andrea Splendiani, Albert Burger, Paolo Romano, Adrian Paschke, and Michael Schroeder have organized the "Semantic Web Applications and Tools for Life Sciences" (SWAT4LS) workshop.
16:01:53 <mscottm> This workshop intends to be a follow up of the successful NETTAB 2007 workshop (see http://www.nettab.org/2007/
16:02:02 <mscottm> It will be held at the UK National e-Science Center (NeSC) in Edinburgh on next 28 November 2008 (one day only).
16:02:05 <ericP> ... asked for presenters at CHI february 26-27
16:02:11 <Susie>  http://www.tri-conference.com/
16:02:23 <ericP> -> http://www.tri-conference.com/ tri conference home page
16:03:03 <ericP> s/next meeting/to be covered in the next meeting/
16:03:09 <Zakim> -Mary
16:03:18 <Zakim> -John_M
16:03:31 <matthias_samwald> bye!
16:03:38 <Zakim> - +0186528aadd
16:03:39 <Zakim> -Rinke
16:03:47 <John_M> gotta go, thanks
16:03:55 <matthias_samwald> matthias_samwald has left #hcls
16:03:58 <Zakim> -SusieStephens?
16:04:04 <cbatchel> OK, off now, many thanks
16:04:07 <Zakim> -cbatchel
16:04:07 <cbatchel> cbatchel has left #HCLS
16:04:41 <ericP> HelenC, can you stay around for a few to work on COI stuff with me?
16:06:07 <ericP> RRSAgent, please draft minutes
16:06:07 <RRSAgent> I have made the request to generate http://www.w3.org/2008/10/02-hcls-minutes.html ericP
16:07:43 <Zakim> -MarkW
16:07:55 <Zakim> -Mary.a
16:10:17 <mscottm> Zakim, unmute MarcoRoos
16:10:17 <Zakim> MarcoRoos should no longer be muted
16:13:49 <AGibson> q+
16:14:05 <mscottm> Zakim, ack MarcoRoos
16:14:05 <Zakim> I see AGibson on the speaker queue
16:14:30 <kidehen> q+
16:16:00 <mscottm> Zakim, ack AGibson
16:16:00 <Zakim> I see kidehen on the speaker queue
16:19:55 <Zakim> -EricP
16:20:16 <HelenC> 519-746-2900 X 3185
16:20:46 <Zakim> -Kingsley_Idehen
16:20:48 <Zakim> -Ted
16:20:48 <Zakim> -Helen_Chen
16:21:02 <kidehen> kidehen has left #hcls
16:21:04 <Zakim> -Kei_Cheung
16:21:06 <Zakim> -mscottm
16:21:06 <Zakim> -MarcoRoos
16:21:13 <HelenC> eric, my extension is 3186
16:21:15 <michel> michel has left #HCLS
16:21:16 <Zakim> -AndrewGibson
16:21:18 <Zakim> SW_HCLS()11:00AM has ended
16:21:19 <Zakim> Attendees were +1.781.662.aabb, Kingsley_Idehen, Kei_Cheung, Rinke, Helen_Chen, +0186528aadd, EricP, John_M, MarkW, Ted, Yimen, mscottm, Mary, AndrewGibson, michel, cbatchel,
16:21:22 <Zakim> ... MarcoRoos
16:21:55 <ericP> HelenC, oops, just called dave wilson
16:29:12 <ericP> http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability
17:13:19 <ericP> ./tests/execute_HealthCare1 t.rq -s http://hospital.example/DB/ -q | mysql -u root DiabeticPatientsDataSet --table
17:19:18 <ericP> http://www.w3.org/2008/04/SPARQLfed/
17:20:58 <ericP> make tests/execute_HealthCare1
17:22:07 <ericP> set PWD=.