HCLSIG/Products
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Contents |
Semantic Web for Health Care and Life Sciences Interest Group
Home | Outreach | Documents | Demonstrations | Translational Medicine perspective
This list of HCLSIG products serves as an index for the community and attests to the productivity and impact of the group. Presentations are on their own page.
Summary of Deliverables
We would like to acknowledge the health care and life sciences community for meeting the goals of the last charter. Over the course of the charter, the IG has developed a set of data and demonstrators enabling life science and health care practitioners to consume and reason over domain data. Here are some highlights:
- Linked Open Drug Data (LODD) and winning the iTriplification Challenge 2009
- Light-weight CDISC – HL7 bridge for patient eligibility studies
- SPARQL Federation and RDF to SQL through SWObjects
- Semantic integration of LODD, patient data via the Translational Medicine Ontology (TMO)
- non-proliferation of ontologies and interoperability with other standards and conventions
- HCLS Knowledge Base
More follow in the sections below.
Recent/Upcoming Outreach Activities
- EBI Semantic Web Industry Workshop HCLS sent three speakers May 16 - 18, 2011
- PRISME meeting M. Scott Marshall invited to present W3C perspective, Wellcome Trust, Hinxton, UK May 2011
- Japanese Semantic Web conference M. Scott Marshall gave HCLS Keynote at March 2011
- Best Practices in Personalized Medicine Workshop HCLS Presentation, March 2011
- Vancouver Bioinformatics Users Group M. Scott Marshall, HCLS presentation, March 2011
- C-SHALS 2011 HCLS members gave tutorials and presentations
- Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) in Berlin Dec 2010
- Pharmaceutical Technology IT Summit M. Scott Marshall invited speaker, London, Sept 2010
- Semantic Technology Conference M. Scott Marshall co-organized HCLS session with Christine Golbreich June 2010
- The Future of the Web for Collaborative Science 2010
- HCLS Tutorial at CSHALS 2010
- Meeting Archive
HCLS Documents
- Ontology of Rhetorical Blocks (ORB) W3C Note 2011
- The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
- Linked open drug data for pharmaceutical research and development Journal of Cheminformatics Thematic Series around the "ACS RDF 2010" meeting 2011
- Tutorial: Query Federation with SWObjects at SWAT4LS 2010
- Provenance of Microarray Experiments for a Better Understanding of Experiment Results
- Semantic Web Applications in Neuromedicine (SWAN) Ontology - W3C Note 2009
- SIOC, SIOC Types and Health Care and Life Sciences - W3C Note 2009
- SWAN/SIOC: Alignment Between the SWAN and SIOC Ontologies - W3C Note 2009
- A journey to Semantic Web query federation in the life sciences - BMC Bioinformatics Special Issue: "Semantic Web Applications and Tools for Life Sciences" 2009
- Linking Open Drug Data - iTriplification Challenge 2009
- Linked Data for Connecting Traditional Chinese Medicine and Western Medicine - Abstract for poster at DILS 2009
- Pharma Ontology: Creating a Patient-centric Ontology for Translational Medicine - Abstract for poster at ICBO 2009
- Enabling Tailored Therapeutics with Linked Data - LDOW Workshop, WWW 2009
- A Prototype Knowledge Base for the Life Sciences - W3C Note 2008
- Experiences with the Conversion of SenseLab Databases to RDF/OWL - W3C Note 2008
HCLS Demonstrations
- BioRDF Microarray RDF Demo
- Clinical Observations Interoperability Demonstration
- 7 Translational Membrane federated query
- HCLS Knowledge Base
