HCLSIG/SWANSIOC/Meetings/2010-12-06 Conference Call
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- Duration: 1hr
Zakim RRS Agent Magic (for meeting scribes) /invite Zakim #BioRDF /invite RRSAgent #BioRDF RRSAgent, please draft minutes RRSAgent, please make log world-visible
Agenda
- Presentation by Gully Burns (USC/ISI) on KEfED
Slides: http://www.slideshare.net/gullyburns/kefed-introduction-1205102224
Notes
- Focus is on knowledge engineering not ontology building
- KEfED focuses on Experimental Design Model - elements of KEfED model include experiment information, data and interpretations
- Captures relationship between dependent and independent variable and the interpretations from the data
- Developed web-based tool that can aide in experimental design - for example a mouse is administered drugs and blood pressure is measured
- Tool currently uses NCBO to find mapping of variables to ontologies, but plans are to embed ontology
- Tool was built to support neuroscience which is under-supported by computational biology
- Complex experiment can be modeled using the tool
- A Flash component has been embedded in a Montana university database in collaboration with Science Commons, MSU and funded by MJFF & Kinetic Foundation
- Allows researchers to build knowledge repository from their data. Funded to build Bioscholar, which enables PIs to create your own knowledgebase
- Idea is to get simpler version of OBI but there are hooks into the more detailed ontological representations. No need to get Kefed ontology correct first time
- Final goal is to get this compliant with Semantic Web standards.