HCLSIG/PharmaOntology/Meetings/2009-08-06 Conference Call

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Conference Details

  • Date of Call: Thursday August 6 2009
  • Time of Call: 12:00pm Eastern Daylight Time (EDT), 17:00 British Summer Time (BST)
  • Dial-In #: +1.617.761.6200 (Cambridge, MA)
  • Dial-In #: +33.4.89.06.34.99 (Nice, France)
  • Dial-In #: +44.117.370.6152 (Bristol, UK)
  • Participant Access Code: 42572 ("HCLS2").
  • IRC Channel: irc.w3.org port 6665 channel #HCLS2 (see W3C IRC page for details, or see Web IRC)
  • Mibbit instructions: go to http://www.mibbit.com/chat and click the server link. Enter irc.w3.org:6665 into that box, enter a nickname, and enter #HCLS2 for the channel
  • Duration: ~1h
  • Convener: Susie

Agenda

  • Review Actions
  • DILS & ICBO poster sessions - Colin, Jun
  • Potential paper in JBI - Susie
  • Spreadsheet editing rights - Susie, Elgar
  • Chemogenomics use case - Colin
  • Review of Classes and Class Definitions - Colin, Christi, Elgar, Trish, Bosse
  • AOB

Minutes

Attendees: Christi, Colin, Bosse, Trish, Elgar, Michel, Susie, Scott

<Susie> Review of outstanding action items

<michel> colin: posters - dils in manchester - most people liked it - fit with DILS, HCLS, linked data, patient focus clear, pharma rocket model, more detailed model - questions about security - patient data, concrete interest from industry to contact W3C

<michel> colin: posters - ICBO in buffalo - thinking hard about ontology, careful look at poster, where are the x or y - try to keep it narrow, ontological questions - OBI people interested - acknowledged in person (but could be on poster), poster doesn`t mention biological processes rather than just phenotype

<michel> colin: the sketch didn`t have the details

<michel> opportunity to publish online - need author permissions

<michel> nature preceedings

<michel> colin: questions about heavily licensed resources, but we want open and free for semweb

<michel> colin: cdisc / send

<michel> trish: who in OBI interested? Richard?

<michel> colin: yes

<michel> trish: previous related efforts

<Susie> http://lillyodmlibrary.codeplex.com/ 10% of Lilly's Data Element Dictionary

<michel> colin: OCI

<michel> susie: invite to contribute to special issue of JBI

<michel> susie: deadline - end of Oct

<michel> susie: ontology is early stage... would be worthwhile to try for it

<michel> susie: need to allocate more time to TMO make it happen

<michel> susie: proposes go for paper - need to know who's interested to devote time

<michel> susie: ~couple of hours a week

<michel> colin: yes. will force us to have something and think about the details

<michel> colin: weekly telecon?

<michel> susie: telecon plays good coordination role, but should arrange to have focused topic calls

<michel> trish: physical co-location?

<michel> trish: in support for paper, will make progress in any case

<michel> christi: concerned about time

<michel> christi: landlocked

<michel> elgar: conservative approach; work towards deadline; may be able to travel

<michel> colin: no travel

<christi> posters have been uploaded to the wiki pages for DILS and ICBO

<michel> trish: east coast travel possible

<mscottm> thanks christi - you read my mind!

<michel> susie: what's needed? first version of ontology - and apply it in some rudimentary way

<michel> elgar: need dataset to drive the work

<michel> susie: June helping out in DILS session - mentioned LODD made a number of RDF datasets that could be relevant

<michel> susie: clinical trials, traditional chinese datasets, etc

<michel> susie: could invite LODD member

<michel> colin: LODD paper?

<michel> susie: yes, part of LOD workshop

<michel> Bosse: need outline for paper - this would help for contributions

<michel> susie: create google docs to get started

<michel> Bosse: will contribute as much as possible, but cannot travel at this time

<michel> i am also interested in participating, but travel before F2F unlikely

<michel> susie: spreadsheet

<michel> susie: access issue

<michel> elgar: give everyone read access, but only people that participate in discussions have write

<michel> colin & susie agree to read access

<michel> elgar: need more flexible editing platform now

<michel> susie: have a telecon to go over everything, then move to OWL file

<michel> colin: review of TMO classes to next week - this topic alone

<michel> all concur

<michel> susie: all to review for next week

<michel> susie: to send out announcement to list

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