HCLSIG/PharmaOntology/Meetings/2009-05-14 Conference Call

Conference Details

• Date of Call: Thursday May 14, 2009
• Time of Call: 12:00pm Eastern Daylight Time (EDT), 17:00 British Summer Time (BST)
• Dial-In #: +1.617.761.6200 (Cambridge, MA)
• Dial-In #: +33.4.89.06.34.99 (Nice, France)
• Dial-In #: +44.117.370.6152 (Bristol, UK)
• Participant Access Code: 42572 ("HCLS2").
• IRC Channel: irc.w3.org port 6665 channel #HCLS2 (see W3C IRC page for details, or see Web IRC)
• Duration: ~1h
• Convener: Christi

Agenda

• Review Actions
• Review of F2F - Elgar
• Proposed classes and properties - All
• DILS poster - Christi DILS 2009 Abstract
• Material for poster at International Conference on BioMedical Ontology - Colin and Holger
• AOB

Pharma Ontology Minutes May 14, 2009-05-14

Attendees: Christi, Colin, Elgar, Holger, Joanne, Julia, Larissa, Lynn

Regrets: Bosse, Sandor

• 12:05 holger_stenzhorn invite zakim
• 12:06 holger_stenzhorn /invite Zakim #hcls2
• 12:12 holger_stenzhorn zakim, this is hcls2
• 12:16 jluciano http://esw.w3.org/topic/HCLSIG/PharmaOntology
• 12:17 ChristiDenney topic: f2f
• 12:17 ElgarPichler http://esw.w3.org/topic/HCLSIG/Meetings/2009-04-30_F2F
• 12:18 ChristiDenney elgar: susie gave semantic update, then had nih presentation (maryanne marton)
• 12:19 ChristiDenney elgar: 5 tasks within hcls; each gave an overview and progress
• 12:19 ChristiDenney elgar: elgar and susie gave the update for pharma ontology
• 12:19 ElgarPichler http://esw.w3.org/topic/HCLSIG/PharmaOntology/Meetings/2009-05-14_Conference_Call
• 12:20 ChristiDenney elgar: go to pharma ontology page and look for attachment
• 12:21 ChristiDenney elgar: described how looked at candidate source vocab for pharma ontology
• 12:23 ChristiDenney elgar: narrowed questions to 2-3 roles for breakout; looked at clinician roles
• 12:25 ChristiDenney elgar: 6-7 major classes
• 12:26 ChristiDenney elgar: F2F_PO_MindMap.jpg on attachments page
• 12:26 ChristiDenney elgar: still to do #1 go through roles and questions
• 12:27 ChristiDenney elgar: and find classes
• 12:27 ChristiDenney elgar: #2 determine how we manage the collaborative ontology development. protege?
• 12:28 ChristiDenney elgar: or text or spreadsheets?
• 12:28 ChristiDenney elgar: need a strategy for how we will combine our work
• 12:29 ChristiDenney elgar: no relations have been explicitely defined
• 12:29 ChristiDenney elgar: for 1st few iterations, he could put them out for review
• 12:29 ChristiDenney colin: wiki is a good place to work
• 12:30 ChristiDenney colin: relationships we need may be a small set; experiment, treatment... may have participants; has role, has phenotype
• 12:30 ChristiDenney elgar: would be surprised if those are only roles, but they are good candidates
• 12:31 ChristiDenney elgar: friday had sections on hcls strategy, integration points, conference papers/outreach/grants
• 12:31 ChristiDenney elgar: would recommend that we read the minutes on the hcls site
• 12:31 jluciano what's the full URL to the F2F -- Is it an attachment on the PharmaOntology wiki site or on the HCLSIG F2F
• 12:32 ChristiDenney elgar: question was posed RE: what people want to see/is important for them to get from the hcls group
• 12:32 ChristiDenney elgar: people would like "cookbook" and recommendations from hcls group
• 12:33 ChristiDenney f2f info: http://esw.w3.org/topic/HCLSIG/Meetings/2009-04-30_F2F
• 12:34 ChristiDenney entities: bio process, dose, material, experiment, treatment
• 12:34 ChristiDenney entities: role
• 12:35 ChristiDenney elgar: would like to go through questions for another role before we dive deeper into these classes
• 12:35 ChristiDenney entities: measure
• 12:37 ChristiDenney entities: phenotype
• 12:39 ChristiDenney elgar: can look at the owl file for entities
• 12:40 *** lsoldato joined #hcls2
• 12:40 ChristiDenney http://esw.w3.org/topic/RecentChanges
• 12:40 *** lsoldato left #hcls2
• 12:41 ChristiDenney ontology file: 'PO_Ontology_v01.owl '.
• 12:41 ChristiDenney colin: need to get good definitions
• 12:43 ChristiDenney go to http://esw.w3.org/topic/HCLSIG/PharmaOntology/Meetings/2009-05-14_Conference_Call, then click attachments
• 12:44 ChristiDenney elgar: would recommend that everyone go through these materials, review, and comment;
• 12:44 ChristiDenney elgar: then look at clinician view and find new classes
• 12:47 ChristiDenney elgar will put classes on the page: http://esw.w3.org/topic/HCLSIG/PharmaOntology/Classes
• 12:48 ChristiDenney elgar: can we have an ontology that relates classes to use cases and questions?
• 12:48 ChristiDenney http://esw.w3.org/topic/HCLSIG/PharmaOntology/Roles
• 12:51 ChristiDenney elgar: the view they looked at was Clinical Trial Formulator/Lead Physician View
• 12:52 lynn_pharma Clinical Trial Formulator/Lead Physician View
• 12:52 ChristiDenney elgar: and the Biologist View
• 12:52 ChristiDenney (both in-vitro and in-vivo)
• 12:53 ChristiDenney elgar: concensus at f2f was to work on clinicial view first
• 12:55 ChristiDenney topic: DILS 2009
• 12:55 ChristiDenney group is okay with submitting the abstract
• 12:57 ChristiDenney colin: bosse is not on the abstract
• 12:57 jluciano where's the apbstracrt?
• 13:03 ChristiDenney action: christi to update names on abstracts (both)
• 13:03 RRSAgent records action 1
• 13:04 ChristiDenney christi_d@lilly.com
• 13:05 ChristiDenney please send feedback on the abstract to christi_d@lilly.com
• 13:09 jluciano is it possible for someone to send out a calendar invite to this telcon (if it's not done already)
• 13:09 ChristiDenney to joanne, if you can send me your e-mail, i can
• 13:10 ChristiDenney colin: holger and colin have an idea for poster; diagram of pipeline and how classes will fit
• 13:10 ChristiDenney colin: will circulate this to the group
• 13:19 holger_stenzhorn rrsagent, draft minutes
• 13:19 RRSAgent I have made the request to generate http://www.w3.org/2009/05/14-hcls2-minutes.html holger_stenzhorn
• 13:41 RRSAgent I see 1 open action item saved in http://www.w3.org/2009/05/14-hcls2-actions.rdf :
• 13:41 RRSAgent ACTION: christi to update names on abstracts (both) [1]
• 13:41 RRSAgent recorded in http://www.w3.org/2009/05/14-hcls2-irc#T17-03-40

Action Items:

• Elgar to post classes from the F2F to the classes wiki page
• Colin to circulate poster ideas
• Christi to route abstracts for review (via e-mail)
• ALL to review classes wiki page