# $Id: pyrNeurSigTransduct.rq,v 1.1 2008/06/05 14:42:00 eric Exp $
# http://esw.w3.org/topic/HCLS/HCLSIG_Demo_QueryScratch#head-3e16329c74cc76fa3cdfd83037b75af13ea3ff9d

prefix go: <http://purl.org/obo/owl/GO#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix mesh: <http://purl.org/commons/record/mesh/>
prefix sc: <http://purl.org/science/owl/sciencecommons/>
prefix ro: <http://www.obofoundry.org/ro/ro.owl#>

select ?genename ?processname

where
{  graph <http://purl.org/commons/hcls/pubmesh>
    { ?paper ?p mesh:D017966 .
      ?article sc:identified_by_pmid ?paper.
      ?gene sc:describes_gene_or_gene_product_mentioned_by ?article.
    }
  graph <http://purl.org/commons/hcls/goa>
    { ?protein rdfs:subClassOf ?res.
      ?res owl:onProperty ro:has_function.
      ?res owl:someValuesFrom ?res2.
      ?res2 owl:onProperty ro:realized_as.
      ?res2 owl:someValuesFrom ?process.
      graph <http://purl.org/commons/hcls/20070416/classrelations>
        {{?process <http://purl.org/obo/owl/obo#part_of> go:GO_0007166} 
         union
        {?process rdfs:subClassOf go:GO_0007166 }} 
      ?protein rdfs:subClassOf ?parent.
      ?parent owl:equivalentClass ?res3.
      ?res3 owl:hasValue ?gene.
     }
  graph <http://purl.org/commons/hcls/gene>
    { ?gene rdfs:label ?genename }
  graph <http://purl.org/commons/hcls/20070416>
    { ?process rdfs:label ?processname}
}