<bobP> I'll try to get on in ~30 min

simon: working on pgx use cases
... collected from clinicians from our institutions
... are they representative?
... sometime in feb
... want to use genotype info for selecting drug or determining dosage

ehr system does not currently support collecting genotype info

scribe: vanderbilt, mayo, mtsinai (new york) have something in place / in works to capture genotype
... matthias's work is very interesting

scott: richard's set of queries are quite impressive

michel: maybe i can present bio2rdf R2 in LLD, invite people to formulate queries and share them

scott: plan to bring up the catalogue concept in LLD

http://www.openphacts.org/specs/2012/WD-datadesc-20121019/

michel: bio2rdf, openphacts, biositemaps, jbcls,
... biodbcore
... bioportal and uniprot now both provide a SPARQL endpoint - exciting development
... ebi hopes to provide biomodels, pride, gxa, chembl
... wikipathways provides sparql endpoint?

<egonw> sparql.wikipathways.org

<egonw> catching train

<egonw> will join next time in the general call again

michel: once a month, let's get the RDF data providers to give a presentation on their SPARQL endpoint, queries, etc

scott: a lot of people interested in clinical data
... representing patient data in rdf
... Lloyd McKenzie has developed a RDF+OWL representation of HL7 RIM, able to use OWL reasoning to validate parts of the information model - great development
... charlie and eric working hard with many groups, important to start getting this into a public forum
... revive and push COI in 2013
... lots of ways to represent disease, ehr
... what predicate to use for patient data?
... jan 22 meeting organized by ehr4cr; involve openphacts, salus, etriks;
... what's happening with lodd?

<mscottm> ehr4cr meeting will also involve EURECA and Linked2safety

michel: bio2rdf will have all of lodd by june 2013
... ckan thedatahub has multiple drugbank entries
... we need to update the bio2rdf endpoints there

<mscottm2> Eric Prud'hommeaux: re note, yeah, create the wiki page, populate it with anchors, then add links to those anchors to the IG note (i can do that last step).

<mscottm2> i think the agreed-upon plan was one wiki page with anchors for all the likely sections we'd want to reference. so i guess step 0 is to go through the cur pract doc and figure out what pieces will evolve

<mscottm2> Scott (to Simon): Do we share the same bottleneck of getting patient data from heterogeneous unstructured formats to structured? I would like to associated language patterns and external procedures with ontological concepts in order to accomplish this.

<mscottm2> Simon: Yes, I would be interested in discussing that sometime.

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Guessing minutes URL: http://www.w3.org/2013/01/08-HCLS-minutes.html
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