trackbot, start telcon

http://www.w3.org/wiki/HCLSIG/SysBio

(Semantic) alignment of SysBio Model related to MAPK pathways

See also:

BioModels Database: http://www.ebi.ac.uk/biomodels-main/

Semantic SBML: http://semanticsbml.org/semanticSBML/simple/index

AOB

http://www.ebi.ac.uk/biomodels-main/search-models.do?cmd=ADVANCED:SEARCH

<abdul> just wondering if there is any presentation or webex going on ?

search in biomodels for system biology models related to MAPK pathways

<egombocz> Does BioModels have SPARQL endpoint access?

@egombocz, not sure

Jun: how people would use other ways to search for models of their interst
... seems that nobody on the call have used biomodels database before

<MarkW> first time looking at it :-)

<ram> Ramkumar from Metaome - We have a life sciences search engine - DistilBio (http://distilbio.com), my first time in the group

@markw, same here:) they seem to be pretty new

<abdul> http://sblab.celldesigner.org/Payao10/bin/

@ram, welcome

<ram> thanks @Jun

<egombocz> Erich Gombocz from IO Informatics - We've developed tools for semantic systems biology-driven data integration http://www.io-informatics.com/products/sentient-KE.html

@egmbocz, thanks! are you not able to talk today?

http://semanticsbml.org/semanticSBML/simple/index

anyone familiar with this project?

<MarkW> new to me too! LOL!

:)

<abdul> I knew

http://www.w3.org/wiki/HCLSIG/SysBio

<abdul> Sorry it seems too basic for me. I have to leave :-) see you next time.

<egombocz> How does BioModels relate to the OpenBEL intiative?

<ram> thanks for the intro

@egombocz, no idea

<egombocz> Is semanticSBML2.0 in part similar to NCBO BioPortal's Annotator services?

<MarkW> agreed

<michael> semanticSBML is from humboldt university in berlin, not sure how similar

<egombocz> thank you!

thanks egombocz!

This is scribe.perl Revision: 1.136  of Date: 2011/05/12 12:01:43  
Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/

Guessing input format: RRSAgent_Text_Format (score 1.00)

No ScribeNick specified.  Guessing ScribeNick: jun
Inferring Scribes: jun

WARNING: No "Topic:" lines found.

Default Present: +1.510.705.aaaa, jun, +1.206.732.aabb, +49.615.14.aacc
Present: +1.510.705.aaaa jun +1.206.732.aabb +49.615.14.aacc

WARNING: No meeting title found!
You should specify the meeting title like this:
<dbooth> Meeting: Weekly Baking Club Meeting


WARNING: No meeting chair found!
You should specify the meeting chair like this:
<dbooth> Chair: dbooth


WARNING: No date found!  Assuming today.  (Hint: Specify
the W3C IRC log URL, and the date will be determined from that.)
Or specify the date like this:
<dbooth> Date: 12 Sep 2002

Guessing minutes URL: http://www.w3.org/2012/05/23-HCLS-minutes.html
People with action items: 

WARNING: Input appears to use implicit continuation lines.
You may need the "-implicitContinuations" option.


WARNING: No "Topic: ..." lines found!  
Resulting HTML may have an empty (invalid) <ol>...</ol>.

Explanation: "Topic: ..." lines are used to indicate the start of 
new discussion topics or agenda items, such as:
<dbooth> Topic: Review of Amy's report


WARNING: IRC log location not specified!  (You can ignore this 
warning if you do not want the generated minutes to contain 
a link to the original IRC log.)