IRC log of HCLS on 2012-03-05

Timestamps are in UTC.

16:01:09 [RRSAgent]
RRSAgent has joined #HCLS
16:01:09 [RRSAgent]
logging to
16:01:20 [mscottm2]
Zakim, this is biordf
16:01:20 [Zakim]
ok, mscottm2; that matches SW_HCLS(BioRDF)11:00AM
16:01:28 [mscottm2]
Zakim, who is here?
16:01:28 [Zakim]
On the phone I see Scott_Marshall
16:01:29 [Zakim]
On IRC I see RRSAgent, mscottm2, achille_z, matthias_samwald1, MacTed, egonw_, Zakim, ericP
16:02:33 [mikel_egana]
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16:03:02 [Zakim]
16:03:21 [Zakim]
+ +1.206.732.aaaa
16:03:25 [matthias_samwald]
matthias_samwald has joined #hcls
16:03:38 [Zakim]
+ +34.65.672.aabb
16:03:42 [michael]
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16:03:42 [Zakim]
16:03:50 [matthias_samwald]
zakim, ??P14 is matthias_samwald
16:03:50 [Zakim]
+matthias_samwald; got it
16:04:15 [michel]
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16:04:32 [egonw_]
I will join in 5 minutes
16:05:00 [Zakim]
16:05:13 [michel]
zakim, IPcaller is michel
16:05:13 [Zakim]
+michel; got it
16:06:23 [Zakim]
16:06:53 [Zakim]
16:07:04 [matthias_samwald]
zakim, ??P14 is matthias_samwald
16:07:04 [Zakim]
+matthias_samwald; got it
16:07:12 [Zakim]
16:07:31 [egonw_]
zakim, IPcaller is egonw
16:07:31 [Zakim]
+egonw; got it
16:09:29 [boycer]
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16:10:23 [Zakim]
+ +1.412.802.aacc
16:14:14 [Zakim]
16:14:41 [Zakim]
16:15:38 [egonw_]
oh, that's interesting!
16:15:42 [egonw_]
yes, please!
16:16:29 [ericP]
-> Zakim-
16:19:23 [egonw]
16:19:56 [Zakim]
16:21:59 [matthias_samwald]
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16:22:27 [mscottm2]
ACTION: Scott addresses Michel's comments
16:22:47 [mscottm2]
ACTION: Egon updates Chembl section
16:23:56 [egonw]
16:24:14 [Zakim]
16:24:31 [mscottm2]
ACTION: Scott requests comments from LOD mailing list
16:24:38 [Zakim]
16:25:11 [mscottm2]
ACTION: Eric and ? moves Google doc to HTML
16:26:31 [mikel_egana]
16:26:32 [Zakim]
16:27:17 [Zakim]
16:29:01 [mscottm2]
re:LODD google doc
16:29:02 [matthias_samwald]
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16:33:55 [matthias_samwald]
matthias_samwald has joined #hcls
16:37:25 [mscottm2]
16:37:41 [Zakim]
- +34.65.672.aabb
16:38:08 [mscottm2]
16:38:15 [egonw]
16:39:13 [egonw]
BTW, my R package is called rrdf and found on CRAN
16:43:08 [mscottm2]
16:46:44 [egonw]
so, pointer:
16:46:58 [egonw]
16:47:17 [egonw]
no, I'll have to see how I can contribute larger stuff I am already doing
16:47:34 [egonw]
I will also read the BioRDF note for the context
16:55:50 [egonw]
sorry, I have to go now
16:55:55 [egonw]
noted my action point...
16:56:01 [egonw]
next call is next week, or when?
16:56:08 [egonw]
I am not familiar with the new structure yet
16:56:15 [egonw]
what's the new telcon frequency?
16:57:50 [Zakim]
16:57:56 [egonw]
16:58:42 [mscottm2]
Michel's start on the diagram
16:58:51 [mscottm2]
is here:
17:09:46 [Zakim]
- +1.412.802.aacc
17:15:39 [Zakim]
- +1.206.732.aaaa
17:15:41 [Zakim]
17:15:42 [Zakim]
17:15:43 [Zakim]
17:15:44 [Zakim]
SW_HCLS(BioRDF)11:00AM has ended
17:15:44 [Zakim]
Attendees were Scott_Marshall, ericP, +1.206.732.aaaa, +34.65.672.aabb, matthias_samwald, michel, egonw, +1.412.802.aacc, [IPcaller]
17:17:08 [mscottm2]
Things left for BioRDF note: Create overview diagram with generic labels
17:17:34 [mscottm2]
..Michel has started the overview diagram (see above)
17:18:32 [mscottm2]
Create list of corresponding (to overview diagram) predicates and suggested ranges as the target RDF representation
17:19:25 [mscottm2]
ACTION: Modify Jim McCusker's R script to produce target representation from affy diff exp gene list
17:20:23 [mscottm2]
Idea: Provide example SPARQL query that duplicates some aspect of GXA (select data for mouse, liver, Huntington's)
17:21:10 [mscottm2]
ACTION: Scott - ask Lena if she can reproduce diagram with labels instead of identifiers for predicates (on edges)
17:22:02 [mscottm2]
ACTION: Scott - ask Jason Eshelman to look at Google Doc again after above edits are done
17:23:02 [mscottm2]
ACTION: Scott - improve introduction
17:48:36 [mscottm2]
Will followup discussion of frequency / calendar of calls in e-mail. One approach has already been suggested: alternating weeks betw BioRDF / LODD. Another approach: combine the task forces into 1 bi-weekly call (split into ~half hours?).
17:48:45 [mscottm2]
RRSAgent, please draft minutes
17:48:45 [RRSAgent]
I have made the request to generate mscottm2
17:48:49 [mscottm2]
RRSAgent, please make log world-visible
18:49:26 [matthias_samwald]
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19:00:22 [matthias_samwald]
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19:22:18 [egonw]
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19:31:40 [matthias_samwald]
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21:29:24 [egonw]
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22:40:37 [db]
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