W3C

- DRAFT -

SV_MEETING_TITLE

13 Sep 2010

See also: IRC log

Attendees

Present
+1.510.387.aaaa, +1.206.605.aabb, Kei_Cheung, +1.216.368.aacc, mscottm, +1.414.456.aadd, matthias_samwald
Regrets
Chair
SV_MEETING_CHAIR
Scribe
ssahoo2

Contents


<jodi> http://www.cs.washington.edu/homes/etzioni/

<mscottm> invite Zakim #hcls

<mscottm> invite RRSAgent #hcls

<kei> scribenick satya

Kei: Agenda is 1) Introduction of new members, 2) update on SWPM workshop submission, 3) next steps

<mscottm> spelling: Simon Twigger

Simon: At U Wisconsin Milwaukee, have a project with NCBO
... working on rat project using multiple ontologies

<kei> rat genome project

Simon: Use NCBO annotator tool for processing texts from Rat genome project
... Exploring connect phenotype with gene using RDF representation model

Kei: summarizes BioRDF task force activities, including recent initiative on query federation on microarray dataset
... query federation scenario includes provenance metadata describing experiment conditions for microarray datasets

Simon: interested in making Rat genome datasets available in RDF format

Kei: Update on the paper submitted to the Semantic Web and Provenance Management workshop to be held with ISWC'10

<kei> notification will be announced by sept 24

http://wiki.knoesis.org/index.php/SWPM-2010

Kei: Next steps include exploring the re-use of existing ontologies for the microarray data query federation scenario
... Scott identified Disease ontology as a relevant ontology for the microarray use case
... Link current microarray dataset with proteomics or related datasets
... extend the SWPM submission to write another paper with a focus on the life sciences or bioinformatics community

Scott: contact members of other microarray data providers such as GEO to extend the current dataset

<mscottm> http://lists.w3.org/Archives/Public/public-semweb-lifesci/2010Aug/0022.html

Scott: Misha at Gene Atlas has offered to make microarray dataset available to this group
... Post a description of current microarray dataset to the HCLS mailing list

Kei: Agreement on extending the current work and write a new paper
... Identify potential targets for the next paper

Satya: potentially extending the SWPM workshop paper to write a journal paper

<mscottm> http://www.swat4ls.org/2010/call.php#overview

<mscottm> 12 October 2010

Scott: SWAT4LS workshop is another potential target, accepted paper will be published in BMC bioinformatics

Kei: Decide on the alternatives in next couple of days - SWAT4LS, Jounal of Semantic Web, BMC Bioinformatics, PLoS One

Summary of Action Items

[End of minutes]

Minutes formatted by David Booth's scribe.perl version 1.135 (CVS log)
$Date: 2010/09/13 15:48:58 $

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Default Present: +1.510.387.aaaa, +1.206.605.aabb, Kei_Cheung, +1.216.368.aacc, mscottm, +1.414.456.aadd, matthias_samwald
Present: +1.510.387.aaaa +1.206.605.aabb Kei_Cheung +1.216.368.aacc mscottm +1.414.456.aadd matthias_samwald

WARNING: No meeting title found!
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<dbooth> Meeting: Weekly Baking Club Meeting


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<dbooth> Chair: dbooth

Got date from IRC log name: 13 Sep 2010
Guessing minutes URL: http://www.w3.org/2010/09/13-hcls-minutes.html
People with action items: 

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<dbooth> Topic: Review of Amy's report


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