See also: IRC log
<jodi> http://www.cs.washington.edu/homes/etzioni/
<mscottm> invite Zakim #hcls
<mscottm> invite RRSAgent #hcls
<kei> scribenick satya
Kei: Agenda is 1) Introduction of new members, 2) update on SWPM workshop submission, 3) next steps
<mscottm> spelling: Simon Twigger
Simon: At U Wisconsin Milwaukee,
have a project with NCBO
... working on rat project using multiple ontologies
<kei> rat genome project
Simon: Use NCBO annotator tool
for processing texts from Rat genome project
... Exploring connect phenotype with gene using RDF
representation model
Kei: summarizes BioRDF task force
activities, including recent initiative on query federation on
microarray dataset
... query federation scenario includes provenance metadata
describing experiment conditions for microarray datasets
Simon: interested in making Rat genome datasets available in RDF format
Kei: Update on the paper submitted to the Semantic Web and Provenance Management workshop to be held with ISWC'10
<kei> notification will be announced by sept 24
http://wiki.knoesis.org/index.php/SWPM-2010
Kei: Next steps include exploring
the re-use of existing ontologies for the microarray data query
federation scenario
... Scott identified Disease ontology as a relevant ontology
for the microarray use case
... Link current microarray dataset with proteomics or related
datasets
... extend the SWPM submission to write another paper with a
focus on the life sciences or bioinformatics community
Scott: contact members of other microarray data providers such as GEO to extend the current dataset
<mscottm> http://lists.w3.org/Archives/Public/public-semweb-lifesci/2010Aug/0022.html
Scott: Misha at Gene Atlas has
offered to make microarray dataset available to this
group
... Post a description of current microarray dataset to the
HCLS mailing list
Kei: Agreement on extending the
current work and write a new paper
... Identify potential targets for the next paper
Satya: potentially extending the SWPM workshop paper to write a journal paper
<mscottm> http://www.swat4ls.org/2010/call.php#overview
<mscottm> 12 October 2010
Scott: SWAT4LS workshop is another potential target, accepted paper will be published in BMC bioinformatics
Kei: Decide on the alternatives in next couple of days - SWAT4LS, Jounal of Semantic Web, BMC Bioinformatics, PLoS One
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