W3C

- DRAFT -

HCLS

02 Oct 2008

See also: IRC log

Attendees

Present
Regrets
Chair
SV_MEETING_CHAIR
Scribe
ericP

Contents


 

/invite RRSAgent #hcls

<cbatchel> Hello, Colin here, about to ring up.

<kei> I need to step out for a brief moment and will be back in one minute

<matthias_samwald> oops

<matthias_samwald> seems like i misidentified

<scribe> Scribe: ericP

intros

MarkW: services on the semantic web

MaryK: diagnostic intelligence
... managing entity for SNOMED CT

HelenC: researcher for Agfa
... interested in knowledge management/decision support

June: oxford
... modeling scientific discourse

ted basher: consulting firm

scribe: interested and bioinformatics and Sw

yimin: just joined Lilly
... worked with allen recter

Andrew: Univ AMS
... working with a KB targeting peroxisome

<mscottm> ..peroxisome

Andrew: interested in semweb tech, particularly OWL

f2f agenda

COI: working on end-to-end demo

BioRDF [Kei]: 2 presentations:

scribe: .. Olivier [NLM] - UMLS-to-OWL conversion
... .. talk on BioPortal
... talks were complementary
... for next call, invited two groups to talk about domain-specific ontologies

Susie: and DERI has agreed to host the HCLS KB

<cbatchel> ericP, thanks

LODD [Susie]

<mscottm> cbatchel, sorry we missed you in the introductions!

Susie: applying LOD principles to drug data
... some folks doing literature searches

<mscottm> Maybe we can introduce Colin at the next 'break' in the agenda

Susie: folks charactarizing the datasets technically, legally, logistically, and for currency
... identifying use cases for what we can do when drug data is linked together
... expect to anchor identifiers in dbpedia

topic SWAN/Sioc

Susie: integrating SWAN and SIOC ontologies. had call on Monday

matthias_samwald: agreed to examine schemas and ontologies for the representation of citations
... this week, investigating whether we can use the bibliographic ontology

Susie: next call tomorrow

topic Terminology

John_M: transitioning Sesamy repository to a new server at Duke
... should include a better interpretation of SNOMED CT, using SKOS
... IHSTO (owns SNOMED) having meeting next week in Denmark
... hope to get clarification of what data can be distributed to countries with no SNOMED license
... Mary working on XForms platform on pathologies DB
... expect to use GRDDL to go from XForms reps to RDF

mscottm: tell us more about this XForms platform

John_M: built on Orbion (Van Der List et all)
... they have an open source model (do consulting for food money)
... it's server-side xforms
... services the forms with some AJAX
... don't need an XForms-capable browser to use the forms
... also have an alpha xforms desinger

ericP: endpoing to play with?

John_M: have an alpha one with dummy data and schemas

<Susie> http://esw.w3.org/topic/HCLSIG/F2F/2008-10_F2F

iswc tutorial

f2f agenda

Susie: agenda getting more concrete

-> http://esw.w3.org/topic/HCLSIG/F2F/2008-10_F2F HCLS f2f

introductions

colin bacholder: interested in representing chemical compounds and [] on the SW

topic f2f agenda

f2f agenda

Susie: expecting a talk from Charlie Mead about what HL7 is/will be
... will get updates on OWL2, RIF

<John_M> specimen xforms: http://tarski.duhs.org:8080/orbeon/fr/orbeon/builder/test/FA0B9FECFD76D0E8DF6A809D7C9E18D8/

Susie: a section on outreach (karen meyers will present on available resources/techniques)
... EricN will give us an update on what he hears
... updates on the task forces
... discuss linkage points between the tasks
... please register ASAP

<cbatchel> ericP, s/[]/journal articles/ (but maybe this ties in with SIOC)

-> http://www.w3.org/2002/09/wbs/35125/TPAC2008/ TPAC registration

-> http://www.w3.org/Help/Account/?check=1 register for a public account

-> http://www.w3.org/2004/01/pp-impl/38539/join join HCLS

-> http://www.w3.org/2002/09/wbs/35125/TPAC2008/ register for the TPAC

iswc tutorial

<Susie> http://esw.w3.org/topic/HCLS/ISWC2008/Tutorial

Susie: set speakers for the ISWC tutorial
... slides et all available on the ISWC wiki page

-> http://esw.w3.org/topic/HCLS/ISWC2008/Tutorial HCLS ISWC wiki page

<Susie> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call

NCBO workshop

<kei> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call?action=AttachFile&do=get&target=NCBO_clinical_phenotype_ont.pdf

kei: workshop happened last month
... HCLS well represented: Chimezie and Tim Clark
... more details about the talk on the workshop overview slides

-> http://esw.w3.org/topic/HCLSIG/Meetings/2008-10-02_Conference_Call?action=AttachFile&do=get&target=NCBO_clinical_phenotype_ont.pdf workshop overview slides

kei: i am involved with BrainPharm
... captures links between neuronal level and the disease level
... integrating data not just from databases, but from different levels
... that's why BrainPharm related to the theme of this WG

is whining about a symptom considered a sign?

<mscottm> LOL

<mscottm> http://www2009.org/ in Madrid, Universidad Polit�cnica de Madrid co-hosting

iswc tutorial

<mscottm> Deadline for workshop proposals: Oct. 10

<mscottm> http://www.swat4ls.org/

Susie: Scott will be presenting at swat for lifesci (to be covered in the next meeting)

<mscottm> Call for SWAT4LS papers extended until Oct. 13

<mscottm> Andrea Splendiani, Albert Burger, Paolo Romano, Adrian Paschke, and Michael Schroeder have organized the "Semantic Web Applications and Tools for Life Sciences" (SWAT4LS) workshop.

<mscottm> This workshop intends to be a follow up of the successful NETTAB 2007 workshop (see http://www.nettab.org/2007/

<mscottm> It will be held at the UK National e-Science Center (NeSC) in Edinburgh on next 28 November 2008 (one day only).

Susie: asked for presenters at CHI february 26-27

<Susie> http://www.tri-conference.com/

-> http://www.tri-conference.com/ tri conference home page

<matthias_samwald> bye!

<John_M> gotta go, thanks

<cbatchel> OK, off now, many thanks

HelenC, can you stay around for a few to work on COI stuff with me?

Summary of Action Items

[End of minutes]

Minutes formatted by David Booth's scribe.perl version 1.133 (CVS log)
$Date: 2008/10/02 16:06:13 $

Scribe.perl diagnostic output

[Delete this section before finalizing the minutes.]
This is scribe.perl Revision: 1.133  of Date: 2008/01/18 18:48:51  
Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/

Guessing input format: RRSAgent_Text_Format (score 1.00)

Succeeded: s/proxyzone/peroxisome/
Succeeded: s/next meeting/to be covered in the next meeting/
Found Scribe: ericP
Inferring ScribeNick: ericP

WARNING: No "Present: ... " found!
Possibly Present: AGibson Andrew AndrewGibson COI HelenC Helen_Chen John_M Jun June Kei_Cheung Kingsley_Idehen MarcoRoos MarkW Mary MaryK P10 P15 P33 P40 Rinke Sofia_Celic Susie SusieStephens Ted Yimen aaaa aabb aacc aaee aagg cbatchel ericP inserted is kei kidehen ktolle matthias_samwald michel mscottm perhaps yimin
You can indicate people for the Present list like this:
        <dbooth> Present: dbooth jonathan mary
        <dbooth> Present+ amy


WARNING: No meeting chair found!
You should specify the meeting chair like this:
<dbooth> Chair: dbooth

Got date from IRC log name: 02 Oct 2008
Guessing minutes URL: http://www.w3.org/2008/10/02-hcls-minutes.html
People with action items: 

[End of scribe.perl diagnostic output]