16:03:08 <RRSAgent> RRSAgent has joined #BioRDF
16:03:08 <RRSAgent> logging to http://www.w3.org/2007/02/05-BioRDF-irc
16:03:25 <Zakim> + +1.617.384.aaaa
16:03:30 <vipul> rrsagent, make logs world-visible
16:03:39 <vipul> Zakim, who's on the call?
16:03:40 <Zakim> On the phone I see Scott_Marshall, Susie_Stephens, Vipul_Kashyap, Joanne_Luciano, Don_Doherty, Eric_Neumann, Bill_Bug, [IPcaller], Kei_Cheung, John_Barkley, +1.617.384.aaaa
16:04:36 <samwaldmatthias> samwaldmatthias has joined #BioRDF
16:05:26 <Zakim> +Kerstin_Forsberg
16:06:15 <Zakim> + +1.617.253.aabb
16:07:28 <alanr> alanr has joined #biordf
16:07:33 <alanr> hi folks
16:07:47 <Don> Hi Alan
16:08:45 <jluciano2> We need to define precisely WHAT we will demonstrate
16:08:48 <BillBug> Long time, no see, Alan.  :-)
16:09:13 <Zakim> +??P39
16:09:19 <jluciano2> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup
16:09:34 <vipul> http://esw.w3.org/topic/HCLSIG_BIORDF_Subgroup/Demo/Thoughts
16:09:56 <jluciano2> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Demo_Thoughts/Alzheimer%27s_Proposal
16:10:05 <Helen> Helen has joined #BioRDF
16:10:21 <eneumann> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Demo_Thoughts/Alzheimer%27s_Proposal?action=AttachFile&do=get&target=AD_PDUseCase_05Feb07.doc
16:12:18 <mscottm> mscottm has joined #biordf
16:12:35 <mscottm> sorry - new machine, new irc client install.. finally!
16:12:35 <alanr> alanr has left #biordf
16:13:03 <alanr> alanr has joined #biordf
16:13:06 <mscottm> would somebody please post the Wiki link again?
16:13:32 <alanr> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Demo_Thoughts/Alzheimer%27s_Proposal
16:13:52 <mscottm> THANKS
16:13:55 <eneumann> I assume for any gene or protein mentioned, their WILL also be a Entrez or Uniprot reference!?!
16:15:11 <samwaldmatthias> How much of the information marked with "SWAN/Pubmed" is already available in a structured format (i.e. does not need lots of manual curation)?
16:15:37 <eneumann> Does anyone already have a list of the relevant genes and proteins referenced here? Alan?
16:15:54 <vipul> For each row: identify the data sources and re-engineer the data sources
16:16:19 <alanr> not me. 
16:17:02 <eneumann> I would propose collecting such a list (as id's or as first pass uri's) asap.
16:17:23 <alanr> I have a request out for a comprehensive list of immune related proteins
16:17:26 <Don> q+
16:18:03 <vipul> Action: Populate Brain Pharm with PD Use Case Data
16:18:07 <eneumann> Alan, by antibodies list you also mean "antibodies and their binding targets", right?
16:18:19 <BillBug> How about BioZen?  Matthias - is there data you have that can inform both of these use cases
16:18:44 <Zakim> -Kerstin_Forsberg
16:19:10 <vipul> Gwen and Kei will work together on this
16:19:16 <samwaldmatthias> To Bill: At the time, I have REACTOME in bio-zen format, KIDB and BIND will be available soon.
16:19:22 <alanr> Didn't say antibodies, said immune related proteins. Related to adverse response of immunization that leads into this use case
16:19:43 <alanr> For my other antibody stuff it will be antibody + target
16:19:50 <eneumann> I would also suggest just listing the kinds of predicates for this demo in a non-formal way first, just to match the bullet items; add them in a 5th column to this doc.
16:19:56 <samwaldmatthias> KIDB might have some direct connections to some of the entities in the current use case.
16:20:16 <BillBug> That's great, Matthias.  Both are relevant, but KiDB is especially unique and valuable for these use cases. 
16:21:10 <BillBug> q+
16:21:31 <Helen> q+
16:21:33 <vipul> Action: Don will send research statements to SWAN Team
16:22:02 <eneumann> vipul, who is responsible for action item 1?
16:22:18 <vipul> Kei and Gwen
16:22:35 <BillBug> q++
16:23:11 <vipul> For action item 2, it will be Don and Gwen
16:23:17 <BillBug> q+++
16:23:21 <alanr> q+
16:23:33 <eneumann> ack Don
16:23:37 <eneumann> ack BillBug
16:24:17 <vipul> Don and BIll will work with Gwen to figure out PaTO and SWAN
16:25:03 <vipul> ack Helen
16:25:32 <BillBug> q+
16:26:23 <eneumann> q+ demo script thoughts?
16:26:36 <eneumann> q+: demo script thoughts?
16:26:40 <eneumann> q+ , demo script thoughts?
16:26:48 <eneumann> q+
16:27:03 <eneumann> ack +
16:27:06 <eneumann> ack ++
16:28:50 <BillBug> q-
16:28:54 <vipul> ack alanr
16:31:16 <mscottm> I'm having trouble hearing - there's been a lot of noise on the line
16:31:54 <BillBug> q+
16:31:58 <vipul> ack eneumann
16:32:03 <Zakim> -Eric_Neumann
16:32:11 <vipul> q
16:32:20 <vipul> ack BillBug
16:32:24 <mscottm> Additionally, I realized half way through this that logging on my new mIRC client wasn't turned on: would somebody please send me the complete log after the teleconf
16:32:31 <mscottm> ^?
16:32:44 <Zakim> +Eric_Neumann
16:36:35 <Zakim> - +1.617.384.aaaa
16:37:15 <BillBug> q+
16:38:39 <Don> q+
16:38:44 <jluciano2> q+
16:39:33 <Zakim> -Susie_Stephens
16:40:20 <vipul> ack BillBug
16:42:28 <vipul> ack Don
16:44:03 <vipul> ack jluciano
16:47:01 <vipul> Action: To create the information flow diagram - Susie, Vipul owners
16:50:47 <vipul> Action: Alan R to do the demo script and look at BIll Bug's pointers
16:51:17 <samwaldmatthias> Zakim, what is the agenda?
16:51:17 <Zakim> I see nothing on the agenda
16:52:11 <eneumann> rrsagent, what are the]action items?
16:52:11 <RRSAgent> I'm logging.  Sorry, nothing found for 'what are the]action items'
16:52:21 <eneumann> rrsagent, what are the action items?
16:52:21 <RRSAgent> I see 4 open action items saved in http://www.w3.org/2007/02/05-BioRDF-actions.rdf :
16:52:21 <RRSAgent> ACTION: Populate Brain Pharm with PD Use Case Data [1]
16:52:21 <RRSAgent>   recorded in http://www.w3.org/2007/02/05-BioRDF-irc#T16-18-03
16:52:21 <RRSAgent> ACTION: Don will send research statements to SWAN Team [2]
16:52:21 <RRSAgent>   recorded in http://www.w3.org/2007/02/05-BioRDF-irc#T16-21-33
16:52:21 <RRSAgent> ACTION: To create the information flow diagram - Susie, Vipul owners [3]
16:52:21 <RRSAgent>   recorded in http://www.w3.org/2007/02/05-BioRDF-irc#T16-47-01
16:52:21 <RRSAgent> ACTION: Alan R to do the demo script and look at BIll Bug's pointers [4]
16:52:21 <RRSAgent>   recorded in http://www.w3.org/2007/02/05-BioRDF-irc#T16-50-47
16:53:19 <vipul> ACTION: Get the RDF dumps from BrainPharm and SWAN - Kei and Tim
16:54:10 <vipul> ACTION: Use the RDF dumps to analyze references for Knowledge Artifacts - BIONT
16:55:58 <vipul> ACTION: Familiar with using one RDF Time --- ALL
16:56:07 <Don> My point is to know who knows what RDF tool so that...
16:56:18 <Don> we can assign pieces of the work.
16:58:10 <eneumann> for technical questions, ask Eric Prud'hommeaux for help <eric@w3.org>
17:02:10 <Zakim> -Scott_Marshall
17:03:38 <Zakim> -Eric_Neumann
17:04:10 <Zakim> -Kei_Cheung
17:04:11 <Zakim> -Vipul_Kashyap
17:04:11 <Zakim> -John_Barkley
17:04:12 <Zakim> -??P39
17:04:13 <Zakim> - +1.617.253.aabb
17:04:14 <Zakim> -Joanne_Luciano
17:04:17 <Zakim> -[IPcaller]
17:04:19 <Zakim> -Don_Doherty
17:04:22 <alanr> by
17:04:22 <Zakim> -Bill_Bug
17:04:24 <Zakim> SW_HCLS(BioRDF)11:00AM has ended
17:04:25 <Zakim> Attendees were Scott_Marshall, Susie_Stephens, Vipul_Kashyap, Don_Doherty, Joanne_Luciano, Eric_Neumann, Bill_Bug, [IPcaller], Kei_Cheung, John_Barkley, +1.617.384.aaaa,
17:04:28 <Zakim> ... Kerstin_Forsberg, +1.617.253.aabb
19:11:27 <Zakim> Zakim has left #BioRDF