15:06:01 <RRSAgent> RRSAgent has joined #hcls
15:06:01 <RRSAgent> logging to http://www.w3.org/2006/04/18-hcls-irc
15:06:58 <Ken> Ken has joined #hcls
15:09:19 <vipul> http://esw.w3.org/topic/HCLS/OntologyTaskForce
15:10:22 <vipul> We are discussing the work products of the Ontology Task Force
15:15:08 <vipul> zakim, who' on the call?
15:15:37 <vipul> Zakim, whos's on the call?
15:15:51 <vipul> Zakim, who's on the call?
15:16:04 <vipul> Zakim, who's on the call
15:16:20 <Zakim> Zakim has joined #hcls
15:19:36 <Ken> Sorry, I'm going to have the leave the call for a little while...
15:20:29 <Don> Don has joined #HCLS
15:22:24 <Ken> I'm back, sorry
15:27:02 <vipul> Michael Miller discussed the MAGE-OM effort which uses ontologies for annotations...
15:27:15 <vipul> Zakim, who's on the call?
15:27:15 <Zakim> sorry, vipul, I don't know what conference this is
15:27:16 <Zakim> On IRC I see Don, Zakim, Ken, RRSAgent, vipul
15:27:46 <vipul> Zakim, who's on the call?
15:27:46 <Zakim> sorry, vipul, I don't know what conference this is
15:27:47 <Zakim> On IRC I see Don, Zakim, Ken, RRSAgent, vipul
15:27:53 <vipul> q
15:28:21 <vipul> Zakim, who's on HCLS?
15:28:21 <Zakim> I don't understand your question, vipul.
15:28:33 <vipul> Zakim, who's on the HCLS call?
15:28:33 <Zakim> I don't understand your question, vipul.
15:29:22 <vipul> On the call so far is Don, Ken, Michael, Alan, Karen and Vipul
15:30:23 <vipul> http://mged.sourceforge.net/ontologies/index.php
15:32:17 <vipul> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks/Reagents/Status_Reports/2006-04-17
15:32:46 <vipul> Patterns for representing hierarchical inferences in OWL
15:41:38 <vipul> Alan is stepping through the examples listed in http://esw.w3.org/topic/HCLS/OntologyTaskForce/Ontologization_for_Transitive_Closure_Inferences/Examples
15:50:44 <vipul> Advantages in modeling things as classes
15:51:20 <vipul> Within classes, whether you will be in trouble for using an is-a hierarchy
15:51:50 <vipul> The reasoner  should be aware and not do the wrong thing...
15:52:09 <vipul> The other choice is to model these as individuals...
15:53:33 <vipul> Nice experiment: Take a decent chunk of Snomed.. Create a version with each of these methods...
15:56:34 <vipul> ACTION: Michael will follow up with Chris for presenting ontologies..
15:56:58 <vipul> ACTION: Update Ontologization Task to incorporate Experiment
15:58:53 <vipul> Alan: Debugging the bug
15:59:16 <vipul> Databases of compunds: CAS and KEGG identifiers
15:59:31 <vipul> Encoded the definition of an indentifier in OWL
15:59:59 <vipul> Identified 60-80 mistakes were identified...
16:01:15 <vipul> Value proposition of using ontologies
16:03:45 <vipul> Vocabularies for Assays and Immunoglobins
16:05:14 <Ken> quit
16:10:29 <vipul> ACTION: Don and Karen will present the Terminologies and Ontology stuff at the Human Brain Conference
17:29:16 <Zakim> Zakim has left #hcls